1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtataatagttttatattttgccattcacataccatcttcttactatttttagatgttcacgaggaatgtcatttgtgtaatttataagttgcatttacatttcaataatccattgcatttgcatgtatcttctactcaagttcagttgggctgtattttttacaacattttggtctgcagAGGACAGTGATGGATGCAGTGACTGCTGTGCTTGGAGGTGAATTGCACATTGGTGTTTTTCTCCAGGGAAAACAAGTTAAGGATGACAGTAAAACTCTAC
species | Glycine max |
transcript | GLYMA11G14760.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAGAGCTTTTTATAGAGGTTCCAGAAACTGCAACAATTGGGTCCTTGAAG AGGACAGTGATGGATGCAGTGACTGCTGTGCTTGGAGGTGAATTGCACATTEST: gi|207800143|gb|GD771116.1|GD771116
genomic: CAGAGCTTTTTATAGAGGTTCCAGAAACTGCAACAATTGGGTCCTTGAAGgtataatagt ... tggtctgcagAGGACAGTGATGGATGCAGTGACTGCTGTGCTTGGAGGTGAATTGCACATT
EST: CAGAGCTTTTTATAGAGGTTCCAGAAACTGCAACAATTGGGTCCTTGAAG AGGACAGTGATGGATGCAGTGACTGCTGTGCTTGGAGGTGAATTGCACATTEST: gi|9902267|gb|BE611235.1|BE611235
genomic: CAGAGCTTTTTATAGAGGTTCCAGAAACTGCAACAATTGGGTCCTTGAAGgtataatagt ... tggtctgcagAGGACAGTGATGGATGCAGTGACTGCTGTGCTTGGAGGTGAATTGCACATT
EST: CAGAGCTTTTTATAGAGGTTCCAGAAACTGCAACAATTGGGTCCTTGAAG AGGACAGTGATGGATGCAGTGACTGCTGTGCTTGGAGGTGAATTGCACATT
genomic: CAGAGCTTTTTATAGAGGTTCCAGAAACTGCAACAATTGGGTCCTTGAAGgtataatagt ... tggtctgcagAGGACAGTGATGGATGCAGTGACTGCTGTGCTTGGAGGTGAATTGCACATT
tatcttctactcaagttcagttgggctgtattttttacaacattttggtctgcagAGGACAGTGATGGATGCAGTGACTGCTGTGCTTGGAGGTGAATTGCACATTGGTGTTTTTCTCCAGGGAAAACAAGTTAAGGATGACAGTAAAACTCTAC
tattttttacaacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataatagttttatattttgccattcacataccatcttcttactatttttagatgttcacgaggaatgtcatttgtgtaatttataagttgcatttacatttcaataatccattgcatttgcatgtatcttctactcaagttcagttgggctgtattttttacaacattttggtctgcagAGGACAGTGATGGATGCAGTGACTGCTGTGCTTGGAGGTGAATTGCACATTGGTGTTTTTCTCCAGGGAAAACAAGTTAAGGATGACAGTAAAACTCTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG