Sequence
atgc intronic sequence ATGC exonic sequencegtaattattactctttcaatttattattttctttcatgaatcttgcatcagcaatagttggtaatgccgtaatggtatattgcagTTTTTTGAGCATGGACTTGCATCCCAGAGAAGAGAATTAGCCAACAAACTTCTTGGTCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGTGTCA
Basic information
species | Glycine max |
transcript | GLYMA11G14550.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G14550.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv06s0004g05100.t01 (Vitis vinifera), 3'ss of exon 3
-------------------------------------------gtaattattactctttcaatttattattttctttcatgaatcttgcatcagcaatagttggtaatgccgtaatggtatat----tgcagTTTTTTGAGCATGGACTTGCATCCCAGAGAAGAGAATTAGCCAACAAACTTCTTGGTCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGTGTCA
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gtatgaaattctcttttcgttgcatgattcttgcatgcgcgctatatgtgtgtgtatctgcacacattattattatt-attattatataattttaaatggttt-tacatttgcaactgtttctaattttcagTTTTTTGAGCATGGACTAGTATCCCAGAGAAGAGAACTGGCTGGCAAGCTTTATGGTCATGTACTGACACTTAGCCTTCAAATGTATGGTTGTCGAGTGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21677598|gb|BQ629949.1|BQ629949EST: ATTCCCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAG TTTTTTGAGCATGGACTTGCATCCCAGAGAAGAGAATTAGCCAACAAACTT
genomic: ATTCCCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGgtaattatta ... tatattgcagTTTTTTGAGCATGGACTTGCATCCCAGAGAAGAGAATTAGCCAACAAACTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctttcatgaatcttgcatcagcaatagttggtaatgccgtaatggtatattgcagTTTTTTGAGCATGGACTTGCATCCCAGAGAAGAGAATTAGCCAACAAACTTCTTGGTCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGTGTCA
tatatt TA-rich tract