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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgagaatatttggttgcattagttgatatgtatatgtttgtccctctgtaattttctgaatgccttatcatttttcttttgttctttcaattatatatctccctttagGCCATCGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTTGATGGTAACGTCATGCGCTGTGTACGTGATCAGAATGGTAATCACGTCA

Basic information

species Glycine max
transcript GLYMA11G14500.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G14500.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv06s0004g05100.t01 (Vitis vinifera), 3'ss of exon 4
gtattgagaatatttggttgca--ttagttgatatgtatatgtttgtccctctgtaattt-tctgaatgccttatcatttttcttttgttctttcaattatatatctccctttagGCCATCGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTTGATGGTAACGTCATGCGCTGTGTACGTGATCAGAATGGTAATCACGTCA
              || |||||  ||  |  |  |    ||  |  |    |||| | |  | ||| |      |||||     |        | || | | | |   | |  |||| || |||||||||||||  || || |||||  | |||||| | |||||||||||| |  ||||||| ||||| |||||||||||||| || || ||||
---------gcccatgcttgcaagttcatcaaagttctaatcctaattgaactgtgactgatttgagt------tcattggggatggcaataataaaatgtttctaatcatgcagGCAATAGAAGTTGTTGATCCAGACCAAAAGATTAAAATGGTTGAGGAGCTTGATGGTCATATCATGCGATGTGTGCGTGATCAGAATGGAAACCATGTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23057383|gb|BU578057.1|BU578057
EST:     ATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGTGTCATCCAGAAG                         GCCATCGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTT
genomic: ATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGTGTCATCCAGAAGgtattgagaa ... ctccctttagGCCATCGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgaatgccttatcatttttcttttgttctttcaattatatatctccctttagGCCATCGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTTGATGGTAACGTCATGCGCTGTGTACGTGATCAGAATGGTAATCACGTCA
                                          tatctcccttt  CT-rich tract
           ttatcatttttctttt  TA-rich tract