1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atgctctgcaactctttaacccttgtcattgacttacaagtgcttactaaatttgttctcttattttgtttcactaacacaattcccaatcttttaccagGGCCATTCGACATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTTACGCCATTTTTGGTTGTTTTCTTATCAGAACATTTTGAAGGGGATATC
species | Glycine max |
transcript | GLYMA11G13330.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTCCAGCAGCAGCAAGTTCAGAAATCATTGGAACGTATTCTTTATGCATG GGCCATTCGACATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTEST: gi|22525828|gb|BU084639.1|BU084639
genomic: TTCCAGCAGCAGCAAGTTCAGAAATCATTGGAACGTATTCTTTATGCATGgttagatatt ... cttttaccagGGCCATTCGACATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTTGT
EST: TTCCAGCAGCAGCAAGTTCAGAAATCATTGGAACGTATTCTTTATGCATG GGCCATTCGACATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTEST: gi|192328709|gb|FK022523.1|FK022523
genomic: TTCCAGCAGCAGCAAGTTCAGAAATCATTGGAACGTATTCTTTATGCATGgttagatatt ... cttttaccagGGCCATTCGACATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTTGT
EST: TTCCAGCAGCAGCAAGTTCAGAAATCATTGGAACGTATTCTTTATGCATG GGCCATTCGACATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTTGT
genomic: TTCCAGCAGCAGCAAGTTCAGAAATCATTGGAACGTATTCTTTATGCATGgttagatatt ... cttttaccagGGCCATTCGACATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTTGT
actaaatttgttctcttattttgtttcactaacacaattcccaatcttttaccagGGCCATTCGACATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTTACGCCATTTTTGGTTGTTTTCTTATCAGAACATTTTGAAGGGGATATC
cactaac putative branch site (score: 1)
tcttttacc putative PPT
ttattttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgctctgcaactctttaacccttgtcattgacttacaagtgcttactaaatttgttctcttattttgtttcactaacacaattcccaatcttttaccagGGCCATTCGACATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTTACGCCATTTTTGGTTGTTTTCTTATCAGAACATTTTGAAGGGGATATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG