1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatgtaaaaatgctatattgtagctgcgttaggctcttttcatgatggtttatggctgctgacaatgcttggtgcctctttggaaatattgcttagGTTCTCGGAAACAAGTACCAAAGCAAATTGCTTGAAATAATTGATGCCAG
species | Glycine max |
transcript | GLYMA11G12260.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGAACACTGTCAAGTCTTTCCTTGATCCCAAAACAACTTCAAAGATTCAT GTTCTCGGAAACAAGTACCAAAGCAAATTGCTTGAAATAATTGATGCCAGEST: gi|193511296|gb|FK470371.1|FK470371
genomic: GGAACACTGTCAAGTCTTTCCTTGATCCCAAAACAACTTCAAAGATTCATgtatgtaaaa ... tattgcttagGTTCTCGGAAACAAGTACCAAAGCAAATTGCTTGAAATAATTGATGCCAG
EST: GGAACACTGTCAAGTCTTTCCTTGATCCCAAAACAACTTCAAAGATTCAT GTTCTCGGAAACAAAGTACCAAAGCAAATTGCTTGAAATAATTGATGCCAGEST: gi|18040573|gb|BM308867.1|BM308867
genomic: GGAACACTGTCAAGTCTTTCCTTGATCCCAAAACAACTTCAAAGATTCATgtatgtaaaa ... tattgcttagGTTCTCGGAAACAA-GTACCAAAGCAAATTGCTTGAAATAATTGATGCCAG
EST: GGAACACTGTCAAGTCTTTCCTTGATCCCAAAACAACTTCAAAGATTCAT GTTCTCGGAAACAAGTACCAAAGCAAATTGCTTGAAATAATTGATGCCAGEST: gi|208266803|gb|GE061918.1|GE061918
genomic: GGAACACTGTCAAGTCTTTCCTTGATCCCAAAACAACTTCAAAGATTCATgtatgtaaaa ... tattgcttagGTTCTCGGAAACAAGTACCAAAGCAAATTGCTTGAAATAATTGATGCCAG
EST: GGAACACTGTCAAGTCTTTCCTTGATCCCAAAACAACTTCAAAGATTCAT GTTCTCGGAAACAAGTACCAAAGCAAATTGCTTGAAATAATTGATGCCAGEST: gi|193404447|gb|FK365356.1|FK365356
genomic: GGAACACTGTCAAGTCTTTCCTTGATCCCAAAACAACTTCAAAGATTCATgtatgtaaaa ... tattgcttagGTTCTCGGAAACAAGTACCAAAGCAAATTGCTTGAAATAATTGATGCCAG
EST: GGAACACTGTCAAGTCTTTCCTTGATCCCAAAACAACTTCAAAGATTCAT GTTCTCGGAAACAAGTACCAAAGCAAAEST: gi|15813836|gb|BI786111.1|BI786111
genomic: GGAACACTGTCAAGTCTTTCCTTGATCCCAAAACAACTTCAAAGATTCATgtatgtaaaa ... tattgcttagGTTCTCGGAAACAAGTACCAAAGCAAA
EST: GGAACACTGTCAAGTCTTTCCTTGATCCCAAAACAACTTCAAAGATTCAT GTTCTCGGAAACAAGTACCAAAGCAAATTGCTTGAAATAATTGATGCCAG
genomic: GGAACACTGTCAAGTCTTTCCTTGATCCCAAAACAACTTCAAAGATTCATgtatgtaaaa ... tattgcttagGTTCTCGGAAACAAGTACCAAAGCAAATTGCTTGAAATAATTGATGCCAG
atgatggtttatggctgctgacaatgcttggtgcctctttggaaatattgcttagGTTCTCGGAAACAAGTACCAAAGCAAATTGCTTGAAATAATTGATGCCAG
tgctgac putative branch site (score: 2)
aaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtaaaaatgctatattgtagctgcgttaggctcttttcatgatggtttatggctgctgacaatgcttggtgcctctttggaaatattgcttagGTTCTCGGAAACAAGTACCAAAGCAAATTGCTTGAAATAATTGATGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA