1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...catggttaatgaggatgcatagatatgccgtgtttgtatgaaattatgaattggtttgatatgcagtaaccaagctattctgtaataatacctatgacagGGATAGACAGGGATGCTAGAGAAAGTAGAGACAGAGGAAGGGAGCGCAATGATGGGGAGAGCAGGAACAGAGAGCGAAGCGAAAAAGAGAGGCCTAGCAG
species | Glycine max |
transcript | GLYMA11G11060.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACGTGGGCTTCCTGGTTCAGGGCGTGCTGGTTGGGAGGTCGAGGAACTAG GGATAGACAGGGATGCTAGAGAAAGTAGAGACAGAGGAAGGGAGCGCAATG
genomic: ACGTGGGCTTCCTGGTTCAGGGCGTGCTGGTTGGGAGGTCGAGGAACTAGgtattgctgc ... cctatgacagGGATAGACAGGGATGCTAGAGAAAGTAGAGACAGAGGAAGGGAGCGCAATG
atgaattggtttgatatgcagtaaccaagctattctgtaataatacctatgacagGGATAGACAGGGATGCTAGAGAAAGTAGAGACAGAGGAAGGGAGCGCAATGATGGGGAGAGCAGGAACAGAGAGCGAAGCGAAAAAGAGAGGCCTAGCAG
cagtaac putative branch site (score: 2)
tattctgtaataata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catggttaatgaggatgcatagatatgccgtgtttgtatgaaattatgaattggtttgatatgcagtaaccaagctattctgtaataatacctatgacagGGATAGACAGGGATGCTAGAGAAAGTAGAGACAGAGGAAGGGAGCGCAATGATGGGGAGAGCAGGAACAGAGAGCGAAGCGAAAAAGAGAGGCCTAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - ggatgca
- - - - - - - - - - -gatatgc
- - - - - - - - - - - atatgcc
- - - - - - - - - - - - - - - tgtttgt