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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatgaatagtcatatgaactgtgtcccatgctgtcctgtcttctgcctgcctgaattagttagctttgttatatcttttgttcattgctttacttttcagGAAGTTGCTGAATCTGTTAAAGAAGACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAG

Basic information

species Glycine max
transcript GLYMA11G10770.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G10770.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv06s0004g01310.t01 (Vitis vinifera), 3'ss of exon 6
tatgaatagtcatatgaactgtgtcccatgctgtcctgtcttctgcctgcctgaattagttagctttgttatatcttttgt--tcattgctt-tacttttcagGAAGTTGCTGAATCTGTTAAAGAAGACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAG
  || | | |   |  || ||      || ||      || |   | |      || | | |   | ||  | |  ||  |  |  ||||   ||  || |||||||| || ||||| || ||| | || ||||||||||| ||||||||||||||||||||||||||||| || |||
--tgtaca-tgggaaaaattgatcattatactaattgctcctgatcgtcatcacatgaatcatgctcgtagttttcttcatggtttttgcaaatatcttgcagGAAGTGGCCGAATCCGTGAAACAGGATTTTGGCAGCATCGATATCCTTGTGCACTCACTTGCCAATGGGCCGGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9986202|gb|BE660310.1|BE660310
EST:     ATAAAAGCAAACAAGCGCTATGCCGGTTCATCTAAATGGACAGTTCAG                         GAAGTTGCTGAATCTGTTAAAGAAGACTTTGGCAGCATAGATATCCTTGTG
genomic: ATAAAAGCAAACAAGCGCTATGCCGGTTCATCTAAATGGACAGTTCAGgtatatatac ... tacttttcagGAAGTTGCTGAATCTGTTAAAGAAGACTTTGGCAGCATAGATATCCTTGTG
EST: gi|12773652|gb|BG238579.1|BG238579
EST:     ATATAAAAGCAAACAAGCGCTATGCCGGTTCATCTAAATGGACAGTTCAG                         GAAGTTGCTGAATCTGTTAAAGAAGACTTTGGCAGCATAGATATCCTTGTG
genomic: ATATAAAAGCAAACAAGCGCTATGCCGGTTCATCTAAATGGACAGTTCAGgtatatatac ... tacttttcagGAAGTTGCTGAATCTGTTAAAGAAGACTTTGGCAGCATAGATATCCTTGTG
EST: gi|7796512|gb|AW781909.1|AW781909
EST:     ATAAAAGCAAACAAGCGCTATGCCGGTTCATCTAAATGGACAGTTCAG                         GAAGTTGCTGAATCTGTTAAAGAAGACTTTGGCAGCATAGATATCCTTGTG
genomic: ATAAAAGCAAACAAGCGCTATGCCGGTTCATCTAAATGGACAGTTCAGgtatatatac ... tacttttcagGAAGTTGCTGAATCTGTTAAAGAAGACTTTGGCAGCATAGATATCCTTGTG
EST: gi|15204411|gb|BI427179.1|BI427179
EST:     ATAAAAGCAAACAAGCGCTATGCCGGTTCATCTAAATGGACAGTTCAG                         GAAGTTGCTGAATCTGTTAAAGAAGACTTTGGCAGCATAGATATCCTTGTG
genomic: ATAAAAGCAAACAAGCGCTATGCCGGTTCATCTAAATGGACAGTTCAGgtatatatac ... tacttttcagGAAGTTGCTGAATCTGTTAAAGAAGACTTTGGCAGCATAGATATCCTTGTG
EST: gi|9899327|gb|BE608295.1|BE608295
EST:     ATAAAAGCAAACAAGCGCTATGCCGGTTCATCTAAATGGACAGTTCAG                         GAAGTTGCTGAATCTGTTAAAGAAGACTTTGGCAGCATAGATATCCTTGTG
genomic: ATAAAAGCAAACAAGCGCTATGCCGGTTCATCTAAATGGACAGTTCAGgtatatatac ... tacttttcagGAAGTTGCTGAATCTGTTAAAGAAGACTTTGGCAGCATAGATATCCTTGTG
EST: gi|19053059|gb|BM731726.1|BM731726
EST:     ATAAAAGCAAACAAGCGCTATGCCGGTTCATCTAAATGGACAGTTCAG                         GAAGTTGCTGAATCTGTTAAAGAAGACTTTGGCAGCATAGATATCCTTGTG
genomic: ATAAAAGCAAACAAGCGCTATGCCGGTTCATCTAAATGGACAGTTCAGgtatatatac ... tacttttcagGAAGTTGCTGAATCTGTTAAAGAAGACTTTGGCAGCATAGATATCCTTGTG
EST: gi|7030180|gb|AW459963.1|AW459963
EST:     TATAAAAGCAAACAAGCGCTATGCCGGTTCATCTAAATGGACAGTTCAG                         GAAGTTGCTGAATCTGTTAAAGAAGACTTTGGCAGCATAGATATCCTTGTG
genomic: TATAAAAGCAAACAAGCGCTATGCCGGTTCATCTAAATGGACAGTTCAGgtatatatac ... tacttttcagGAAGTTGCTGAATCTGTTAAAGAAGACTTTGGCAGCATAGATATCCTTGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgcctgaattagttagctttgttatatcttttgttcattgctttacttttcagGAAGTTGCTGAATCTGTTAAAGAAGACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAG
                                       ttgctttacttttc  CT-rich tract
                   tttgttatatctttt  TA-rich tract