1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtttgaattatcatcttatttcaatcatgagctaccttcctgtttatcatcccatcacagtatacgtgttttctccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTTGATGTGATCGATAATCAAATATTTTTTGGGTTACATCTGAAGCTCTCAT
species | Glycine max |
transcript | GLYMA11G09790.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAG AGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTTEST: gi|31475648|gb|CD417676.1|CD417676
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAG AGGTATTTTGGCAATGGACGAATGTCTTGAGTGTCTGACCAGTTCTAAGTTEST: gi|192303487|gb|FG995921.1|FG995921
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: GCTGGATACTCTTCAATAGGACTAGGAACTCCATCCTTCTAATTTTCAAG AGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTTEST: gi|18713219|gb|BM522711.1|BM522711
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAG AGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTTEST: gi|20812647|gb|BQ297125.1|BQ297125
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAG AGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTTEST: gi|31459239|gb|CD401267.1|CD401267
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAG AGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTTEST: gi|151397286|gb|EV267159.1|EV267159
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAG AGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTTEST: gi|12771983|gb|BG236910.1|BG236910
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAG AGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTTEST: gi|31469780|gb|CD411808.1|CD411808
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAG AGGTATTTTGGCAATGGACGTATGTGTTGAGTGTTTGGCCAGTTCTAAGTTEST: gi|31307040|gb|CD392243.1|CD392243
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAG AGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTTEST: gi|14259783|gb|BG882691.1|BG882691
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAG AGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTTEST: gi|193526057|gb|FK483200.1|FK483200
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAG AGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTTEST: gi|151406832|gb|EV276647.1|EV276647
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAG AGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTTEST: gi|58016117|gb|CX702859.1|CX702859
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAG AGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTTEST: gi|58015262|gb|CX702004.1|CX702004
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAG AGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTTEST: gi|23729125|gb|BU762647.1|BU762647
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAG AGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTTEST: gi|192334432|gb|FK024447.1|FK024447
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: GCTGGATACTTTTCAATAGGACTAGGAACTTCATCCTTTTAATTTTCAAG AGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTTTAAGTTEST: gi|21479719|gb|BQ576402.1|BQ576402
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
EST: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAG AGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
genomic: GCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGgtttgaatta ... tccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTT
gagctaccttcctgtttatcatcccatcacagtatacgtgttttctccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTTGATGTGATCGATAATCAAATATTTTTTGGGTTACATCTGAAGCTCTCAT
ttttctccact CT-rich tract
tttatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgaattatcatcttatttcaatcatgagctaccttcctgtttatcatcccatcacagtatacgtgttttctccactgcagAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTTGATGTGATCGATAATCAAATATTTTTTGGGTTACATCTGAAGCTCTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC