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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgattctcattttggtaatgagagattttaatctcagtgaaaagtagatgattagaagttcttttaacaagcttttaatccatctagccaataactgttatcctgcagATGATATGCCAAAGGTAGTCCGTGGAGATTCTGCGAGAGTGGTTCAAATATTTGCAAATCTGATCAACAATTCAATCAAGTTTACTCCAT

Basic information

species Glycine max
transcript GLYMA11G08310.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G08310.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv04s0023g03680.t01 (Vitis vinifera), 3'ss of exon 6
-----------------------------------gtatgattctcattttggtaatgagagattttaatc--tcagtgaaaagtagatgattagaagttctttta-acaagcttttaatccatctagccaataactgt---tatcctgcagATGATATGCCAAAGGTAGTCCGTGGAGATTCTGCGAGAGTGGTTCAAATATTTGCAAATCTGATCAACAATTCAATCAAGTTTACTCCAT
                                     |  | ||| ||  |     ||| |||  | |      ||||  ||   | ||||| |   ||  | | | |   | |||| ||   | |      |  || |   |||  || |||||||||||||||| |||| || ||||| ||||| ||||| |||||||||||||||||||| |||| |||||| |||||||||||  |||
gtatgacaataatattcattgtttgaagccctccaccacaactctaataataaatctgaaagaactgaggtaaccagttgaata-aaatgatcatttgtcttctaatatctgttttttatttgtgttattggtttctatacttattttgtagATGATATGCCAAAGTTAGTTCGAGGAGACTCTGCTAGAGTTGTTCAAATATTTGCAAATCTAATCAGCAATTCTATCAAGTTTACAACAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaagttcttttaacaagcttttaatccatctagccaataactgttatcctgcagATGATATGCCAAAGGTAGTCCGTGGAGATTCTGCGAGAGTGGTTCAAATATTTGCAAATCTGATCAACAATTCAATCAAGTTTACTCCAT
                                   caataac  putative branch site (score: 2)
                                            ttatcct  putative PPT
     ttcttttaa  TA-rich tract