1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gacatattttaatcacgtaataagtaataaccataggcaaaataaagtctgctgcataagaaatgtatttgtacgtgaccatatttgatgatttatgtagTTCAATGGTTTGGCATGGCTCTTCTTGGGTGTCCCCACAAGCAGCTCACTACTTTATAAGGAG
species | Glycine max |
transcript | GLYMA11G08230.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCCGCTCATTTTTATGGAAAATGTTCTTTGAGAAGCATGATGATTACAAG TTTCA-TGGTTTGGCATGGCTCEST: gi|9983988|gb|BE658096.1|BE658096
genomic: TCCGCTCATTTTTATGGAAAATGTTCTTTGAGAAGCATGATGATTACAAGgtaagtttac ... atttatgtagTT-CAATGGTTTGGCATGGCTC
EST: TCCGCTCATTTTTATGGAAAATGTTCTTTGAGAAGCATGATGATTACAAG TTCAATGGTTTGGCATGGCTCTTCTTGGGTGTCCCCACAAGCAGCTCACTAEST: gi|21637544|gb|BM107699.1|BM107699
genomic: TCCGCTCATTTTTATGGAAAATGTTCTTTGAGAAGCATGATGATTACAAGgtaagtttac ... atttatgtagTTCAATGGTTTGGCATGGCTCTTCTTGGGTGTCCCCACAAGCAGCTCACTA
EST: GAGAAGCATGATGATTACAAG TTCAATGGTTTGGCATGG-TCTTCTTGGGTGTCCCCACAAGCAGCTCATTAEST: gi|120534689|gb|EH262822.1|EH262822
genomic: GAGAAGCATGATGATTACAAGgtaagtttac ... atttatgtagTTCAATGGTTTGGCATGGCTCTTCTTGGGTGTCCCCACAAGCAGCTCACTA
EST: TCCGCTCATTTTTATGGAAAATGTTCTTTGAGAAGCATGATGATTACAAG TTCAATGGTTTGGCATGGCTCTTCTTGGGTGTCCCCACAAGCAGCTCACTAEST: gi|16342619|gb|BI968214.1|BI968214
genomic: TCCGCTCATTTTTATGGAAAATGTTCTTTGAGAAGCATGATGATTACAAGgtaagtttac ... atttatgtagTTCAATGGTTTGGCATGGCTCTTCTTGGGTGTCCCCACAAGCAGCTCACTA
EST: TCCGCTCATTTTTATGGAAAATGTTCTTTGAGAAGCATGATGATTACAAG TTCAATGGTTTGGCATGGCTCTTCTTGGGTGTCCCCACAAGCAGCTCACTA
genomic: TCCGCTCATTTTTATGGAAAATGTTCTTTGAGAAGCATGATGATTACAAGgtaagtttac ... atttatgtagTTCAATGGTTTGGCATGGCTCTTCTTGGGTGTCCCCACAAGCAGCTCACTA
agtctgctgcataagaaatgtatttgtacgtgaccatatttgatgatttatgtagTTCAATGGTTTGGCATGGCTCTTCTTGGGTGTCCCCACAAGCAGCTCACTACTTTATAAGGAG
atttgat putative branch site (score: 5)
atatttgatgatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacatattttaatcacgtaataagtaataaccataggcaaaataaagtctgctgcataagaaatgtatttgtacgtgaccatatttgatgatttatgtagTTCAATGGTTTGGCATGGCTCTTCTTGGGTGTCCCCACAAGCAGCTCACTACTTTATAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - -agtctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - tgcataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtgacc