1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttggtgaccatttaaataactttcttctatcaatgctatcaatgccacatcccctggtttcagtggtttgctgcatgtttccttagcttgtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCAT
species | Glycine max |
transcript | GLYMA11G07530.4 |
intron # | 6 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|254328447|gb|GR835412.1|GR835412
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|192310086|gb|FK000650.1|FK000650
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|151397849|gb|EV267722.1|EV267722
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: TTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|10254828|gb|BE822594.1|BE822594
genomic: TTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|31469770|gb|CD411798.1|CD411798
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACCAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|192333274|gb|FK026155.1|FK026155
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|58022382|gb|CX709123.1|CX709123
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|22930561|gb|BU547700.1|BU547700
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|192323914|gb|FK015665.1|FK015665
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|192321262|gb|FK014352.1|FK014352
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTTTACCAGCTGEST: gi|192325458|gb|FK018399.1|FK018399
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|58018488|gb|CX705230.1|CX705230
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|192316544|gb|FK009313.1|FK009313
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|151401645|gb|EV271458.1|EV271458
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: AGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|19934354|gb|BQ079393.1|BQ079393
genomic: AGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|193553113|gb|FK507748.1|FK507748
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttggtgaccatttaaataactttcttctatcaatgctatcaatgccacatcccctggtttcagtggtttgctgcatgtttccttagcttgtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC