Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgacatatttacatattatatctatttaattaagtttatgtccacatatttacctagctatttcagctatttaattattattcaacatgctatgaatcttatgttttttaagccaattaagtatgccgacaatgcattttattcagGTTGCTGATTTTGGATTGGCTAAGTTGACTACTGATAATAATACTCATGTATCGACTCGTGTCATGGGAACTTTCGG

Basic information

species Glycine max
transcript GLYMA11G07180.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07180.1 (Glycine max), 3'ss of exon 6
lower sequence: AT2G18470.1 (Arabidopsis thaliana), 3'ss of exon 5
gttcgacatatttacatattatatctatttaattaagtttatgtccacatatttacctagctatttcagctatttaattattattcaacatgctatgaatcttatgttttttaagcca-attaagtatgccgacaatgcattttattcagGTTGCTGATTTTGGATTGGCTAAGTTGACTACTGATAATAATACTCATGTATCGACTCGTGTCATGGGAACTTTCGG
                                                                      |  | || || ||     |||   ||  |   | | || || |  | | ||| |  |        ||   ||| |||||||| |||||||||||||| |||||||| ||  ||||||| || ||||||||||| |||||||| ||||||||||||||
---------------------------------------------------------------------gtgataaactagtagcttgcat-tcatctacggttttttgttaagactacattgatgacattttgcatttgttt-attcagGTGGCTGATTTTGGATTAGCTAAGTTAACATCTGATAACAACACTCATGTATCTACTCGTGTGATGGGAACTTTCGG

upper sequence: GLYMA11G07180.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv04s0023g01570.t01 (Vitis vinifera), 3'ss of exon 4
gttcgacatatttacatattatatctatttaattaagtttatgtccaca-tatttacctagctatttcagctatttaattattattcaacat---gctatgaatcttatgttttttaagccaattaagtatgccgacaatgcattttattcagGTTGCTGATTTTGGATTGGCTAAGTTGACTACTGATAATAATACTCATGTATCGACTCGTGTCATGGGAACTTTCGG
                                    || | |||||| |  || |    | ||  ||||  |   ||  |||| || |||||   | |  | ||  ||||||    ||||  |   |  |||| |   |||| | | |||||||| ||||||||||| ||||||||| || ||||||| |||   || ||||| || || || ||||||||||| || ||
------------------------------------gtatttgtccataacatgttttcaact-cttcacatgaatatatattgttaaacattaagtttcgcatgctatgttgcccaagctcacccatcatgctg-tgatgcttctcattcagGTGGCTGATTTTGGTTTGGCTAAGCTGTCTACTGACAATTGCACCCATGTCTCTACACGCGTCATGGGAACATTTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaatcttatgttttttaagccaattaagtatgccgacaatgcattttattcagGTTGCTGATTTTGGATTGGCTAAGTTGACTACTGATAATAATACTCATGTATCGACTCGTGTCATGGGAACTTTCGG
                                             ttttattc  CT-rich tract
     tcttatgttttttaa  TA-rich tract