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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttattcatctcaatagttaatggagtatatacaactgtttatttattaactgtgtaaaatacactaacttccatgttgtatttttaattaagattgtctcaccttagctatatgaagtgttttatttacccaaaattatttcctttctataattcactttatacatcctcattaccaatttctacctttttttttccagGAAATTAAAGTTCTTAGCCATCTGCAACATCCAAACATTGTGCAGTATTATGGTAGCGAAATA

Basic information

species Glycine max
transcript GLYMA11G06200.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G06200.1 (Glycine max), 3'ss of exon 6
lower sequence: AT5G66850.1 (Arabidopsis thaliana), 3'ss of exon 3
gttattcatctcaatagttaatggagtatatacaactgtttatttattaactgtgtaaaatacactaacttccatgttgtatttttaattaagattgtctcaccttagctatatgaagtgttttatttacccaaaattat--ttcctttctataattcactttatacatcctcattaccaatttctacctttttttttccagGAAATTAAAGTTCTTAGCCATCTGCAACATCCAAACATTGTGCAGTATTATGGTAGCGAAATA
                                                                                                   | ||||     | |   | |  |     | | |  | | |    |   ||   |  |||  ||  || ||     |||    ||||||  | ||| |||| |||| || ||| |||| ||  | || ||||||||||||||||||||||||| ||||||||| | |
--------------------------------------------------------------------------------------------------gtaacctccaggagagacaattctcccagtgctctcagtcacggctgtgtttggttgttcgtttgttatatatc--ttatagctttctatttatttatttc-agGAGATCAAACTTCTAAGTAACCTTCAACATCCAAACATTGTGCAGTATTTTGGTAGCGAGACA

upper sequence: GLYMA11G06200.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv00s0567g00010.t01 (Vitis vinifera), 3'ss of exon 3
gttattcatctcaatagttaatggagtatatacaactgtttatttattaactgtgtaaaatacactaacttccatgttgtatttttaattaagattgtctcaccttagctatatgaagtgttttatttacccaaaattatttcctttctataattcactttatacatcctcattaccaatttctacctttt-tttttccagGAAATTAAAGTTCTTAGCCATCTGCAACATCCAAACATTGTGCAGTATTATGGTAGCGAAATA
                                                                                             |||   | |   |   |   |    || | |||||| | | || ||| | |  |  |  |   ||||     ||  |  || ||  || || | ||   || ||||||||||||||| |||||||||| ||  | |||||||||||||||||||||| |||||| |||| |
--------------------------------------------------------------------------------------------aattagattatacttatttctt----tgctgtatttagctataaatatcttcaattcagtacaaactt-----atggttttttcctcttccttctttccattcttccagGAAATTAAAATTCTTAGCCAACTAAAGCATCCAAACATTGTGCAGTATTTTGGTAGTGAAACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctataattcactttatacatcctcattaccaatttctacctttttttttccagGAAATTAAAGTTCTTAGCCATCTGCAACATCCAAACATTGTGCAGTATTATGGTAGCGAAATA
                              ccaatttctacctttt  CT-rich tract
     taattcactttata  TA-rich tract