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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacgagtatgtagtatcttcattacaataatccacactagtgtttttttcctttagtaatattttcttatgttgaatgtatacgatgaagtttgtatgatagtctcacaacctttcttatatttcttttctttttcttgcagTCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG

Basic information

species Glycine max
transcript GLYMA11G05940.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G05940.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv07s0031g00600.t01 (Vitis vinifera), 3'ss of exon 6
gtatacgagtatgtagtatcttcat-tacaataatccacactagtgtttttttcctttagtaatattttcttatgttgaatgtatacgatgaagtttgtatgatagtctcacaacctttctta-tatttcttttctttttcttgcagTCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG
        |||  |  |||  | ||     |||||  |   |    |||||||  |||   ||   ||  ||| |||   ||  |   |     | ||||    |     | ||  |  | || |  |   |   | ||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||
--------gtaattgatattcttatgcttgataattgatttt---tttttttttttttgacaag--ttcattaggttatttgctttgaacatgatctgtaaaccatggcaagaaattaccatagtgctatgtgattgtttcttgcagTTATTTTGAGACATATGGTGAAATAACGGATTTGTACATGCCAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192298605|gb|FG989251.1|FG989251
EST:     ATATTTGTTGCCAGGATTCCACAATCAGTAACAGAAGCTACTTTCCGAAG                         TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG
genomic: ATATTTGTTGCCAGGATTCCACAATCAGTAACAGAAGCTACTTTCCGAAGgtatacgagt ... tttcttgcagTCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtttgtatgatagtctcacaacctttcttatatttcttttctttttcttgcagTCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG
              gtctcac  putative branch site (score: 3)
               tctcacaacctttctt  CT-rich tract
                         tttcttatatttcttt  TA-rich tract