1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aaggtatttatattcatttatgctatagtaacctctgtgtttgatctatacctcaaccgtagatgttctcactatggagctgcttgatttttacttacagGATCGCAGAGCTAAAAGGGATGCAGGACATTCACCTAATGATAGAGTAGGGGATGGGTTGAAAGAGGAGGTAACTGTGTCTGTGTCAGTTGATGATGGTA
species | Glycine max |
transcript | GLYMA11G05830.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGGGGCATGTGATACACATGCTTGAAGCTGAAGATTCCCCTTACAAAGAG GATCGCAGAGCTAAAAGGGATGCAGGACATTCACCTAATGATAGAGTAGGGEST: gi|209723008|gb|BW668852.1|BW668852
genomic: TGGGGCATGTGATACACATGCTTGAAGCTGAAGATTCCCCTTACAAAGAGgtaacaataa ... ttacttacagGATCGCAGAGCTAAAAGGGATGCAGGACATTCACCTAATGATAGAGTAGGG
EST: TGGGGCATGTGATACACATGCTTGAAGCTGAAGATTCCCCTTACAAAGAG GATCGCAGAGCTAAAAGGGATGCAGGACATTCACCTAATGATAGAGTAGGGEST: gi|213605481|gb|DB978818.1|DB978818
genomic: TGGGGCATGTGATACACATGCTTGAAGCTGAAGATTCCCCTTACAAAGAGgtaacaataa ... ttacttacagGATCGCAGAGCTAAAAGGGATGCAGGACATTCACCTAATGATAGAGTAGGG
EST: TGGGGCATGTGATACACATGCTTGAAGCTGAAGATTCCCCTTACAAAGAG GATCGCAGAGCTAAAAGGGATGCAGGACATTCACCTAATGATAGAGTAGGGEST: gi|31475669|gb|CD417697.1|CD417697
genomic: TGGGGCATGTGATACACATGCTTGAAGCTGAAGATTCCCCTTACAAAGAGgtaacaataa ... ttacttacagGATCGCAGAGCTAAAAGGGATGCAGGACATTCACCTAATGATAGAGTAGGG
EST: TGGGGCATGTGATACACATGCTTGAAGCTGAAGATTCCCCTTACAAAGAG GATCGCAGAGCTAAAAGGGATGCAGGACATTCACCTAATGATAGAGTAGGGEST: gi|6724952|gb|AW309351.1|AW309351
genomic: TGGGGCATGTGATACACATGCTTGAAGCTGAAGATTCCCCTTACAAAGAGgtaacaataa ... ttacttacagGATCGCAGAGCTAAAAGGGATGCAGGACATTCACCTAATGATAGAGTAGGG
EST: TGGGGCATGTGATACACATGCTTGAAGCTGAAGATTCCCCTTACAAAGAG GATCGCAGAGCTAAAAGGGATGCAGGACATTCACCTAATGATAGAGTAGGGEST: gi|8826057|gb|BE209849.1|BE209849
genomic: TGGGGCATGTGATACACATGCTTGAAGCTGAAGATTCCCCTTACAAAGAGgtaacaataa ... ttacttacagGATCGCAGAGCTAAAAGGGATGCAGGACATTCACCTAATGATAGAGTAGGG
EST: TGGGGCATGTGATACACATGCTTGAAGCTGAAGATTCCCCTTACAAAGAG GATCGCAGAGCTAAAAGGGATGCANGACATTCACCTAATGATAGAGTANGGEST: gi|58016385|gb|CX703127.1|CX703127
genomic: TGGGGCATGTGATACACATGCTTGAAGCTGAAGATTCCCCTTACAAAGAGgtaacaataa ... ttacttacagGATCGCAGAGCTAAAAGGGATGCAGGACATTCACCTAATGATAGAGTAGGG
EST: TGGGGCATGTGATACACATGCTTGAAGCTGAAGATTCCCCTTACAAAGAG GATCGCAGAGCTAAAAGGGATGCAGGACATTCACCTAATGATAGAGTAGGGEST: gi|26048897|gb|CA785350.1|CA785350
genomic: TGGGGCATGTGATACACATGCTTGAAGCTGAAGATTCCCCTTACAAAGAGgtaacaataa ... ttacttacagGATCGCAGAGCTAAAAGGGATGCAGGACATTCACCTAATGATAGAGTAGGG
EST: TGGGGCATGTGATACACATGCTTGAAGCTGAAGATTCCCCTTACAAAGAG GATCGCAGAGCTAAAAGGGATGCAGGACATTCACCTAATGATAGAGTAGGGEST: gi|9258343|gb|BE346490.1|BE346490
genomic: TGGGGCATGTGATACACATGCTTGAAGCTGAAGATTCCCCTTACAAAGAGgtaacaataa ... ttacttacagGATCGCAGAGCTAAAAGGGATGCAGGACATTCACCTAATGATAGAGTAGGG
EST: TGGGGCATGTGATACACATGCTTGAAGCTGAAGATTCCCCTTACAAAGAG GATCGCAGAGCTAAAAGGGATGCAGGACATTCACCTAATGATAGAGTAGGGEST: gi|13240269|gb|BG359578.1|BG359578
genomic: TGGGGCATGTGATACACATGCTTGAAGCTGAAGATTCCCCTTACAAAGAGgtaacaataa ... ttacttacagGATCGCAGAGCTAAAAGGGATGCAGGACATTCACCTAATGATAGAGTAGGG
EST: TGGGGCATGTGATACACATGCTTGAAGCTGAAGATTCCCCTTACAAAGAG GATCGCAGAGCTAAAAGGGATGCAGGACATTCACCTAATGATAGAGTAGGG
genomic: TGGGGCATGTGATACACATGCTTGAAGCTGAAGATTCCCCTTACAAAGAGgtaacaataa ... ttacttacagGATCGCAGAGCTAAAAGGGATGCAGGACATTCACCTAATGATAGAGTAGGG
ctatacctcaaccgtagatgttctcactatggagctgcttgatttttacttacagGATCGCAGAGCTAAAAGGGATGCAGGACATTCACCTAATGATAGAGTAGGGGATGGGTTGAAAGAGGAGGTAACTGTGTCTGTGTCAGTTGATGATGGTA
tttttactt CT-rich tract
ttgatttttactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaggtatttatattcatttatgctatagtaacctctgtgtttgatctatacctcaaccgtagatgttctcactatggagctgcttgatttttacttacagGATCGCAGAGCTAAAAGGGATGCAGGACATTCACCTAATGATAGAGTAGGGGATGGGTTGAAAGAGGAGGTAACTGTGTCTGTGTCAGTTGATGATGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - tttatgc
- - - - - - - - - - - - - - - - - - gtgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - -ctcaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agctgct