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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttttcttaaaagcagacaaacttgtttaggaatatttattactcaaaaaattattaaattcgaagtgtcttaccagatgtgggttgatttggttttgtgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAAGGCATATTGGATAACTATGTTTTCGTGGGTGTCATCAGTGCTACTGTTT

Basic information

species Glycine max
transcript GLYMA11G05190.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G05190.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv07s0129g00110.t01 (Vitis vinifera), 3'ss of exon 5
gtaacttttcttaaaagcagacaaacttgtttaggaatatttattactcaaaaaattattaaattcgaagtgtcttaccagatgtgggttgatttggttttgtgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAAGGCATATTGGATAACTATGTTTTCGTGGGTGTCATCAGTGCTACTGTTT
  |||| |||| | | |    |   |||  || |  |||| |     |   ||   | || |   | |  |  ||||  | | |     ||  ||  || |  ||||||||||||||||||||  || || |||||||||||||| || || || ||||||||| ||||||||||||| || |  | |||  ||| | | |||||  
-aaactcttctgagatgtc--ctttcttaattcgagatatct-cagtttgtaaccctgttgaggac-atctaacttatgaaaaggatcatggcttaattct--gcagGTTTTCAATGAGATAAGCTCCCGAGAAATGGAGAAAATCAATGTATTCAAAGGCATACTGGATAACTATGTATTTGCTGCTGTTCTCACTTCCACTGTCC

upper sequence: GLYMA11G05190.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv07s0129g00180.t01 (Vitis vinifera), 3'ss of exon 6
gtaacttttcttaaaagcagacaaacttgtttaggaatatttattactcaaaaaattattaaattcgaagtgtcttaccagatgtgggttgatttggttttgtgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAAGGCATATTGGATAACTATGTTTTCGTGGGTGTCATCAGTGCTACTGTTT
  |||| |||| | | |    |   |||  ||    |||| |     |   ||   | || |   | |  |  ||||  | | |     ||  ||  || |  ||||||||||||||||||||  || || |||||||||||||| || || || ||||||||| ||||||||||||| || |  | |||  ||| | | || ||  
-aaactcttctgagatgtc--ctttcttaattcaagatatct-cagtttgtaaccctgttgaggac-atctaacttatgaaaaggatcatggcttaattct--gcagGTTTTCAATGAGATAAGCTCCCGAGAAATGGAGAAAATCAATGTATTCAAAGGCATACTGGATAACTATGTATTTGCTGCTGTTCTCACTTCCACCGTCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17964262|gb|BM271000.1|BM271000
EST:     CAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAG                         GTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
genomic: CAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAGgtaacttttc ... ttttgtgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
EST: gi|17962825|gb|BM269582.1|BM269582
EST:     CAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAG                         GTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
genomic: CAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAGgtaacttttc ... ttttgtgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
EST: gi|48575237|gb|CO036303.1|CO036303
EST:     CAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAG                         GTTTTCAATGAGATAAATTCACGTGGAATGGAGAAAATAAACGTTTTTAAA
genomic: CAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAGgtaacttttc ... ttttgtgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
EST: gi|10844525|gb|BF067783.1|BF067783
EST:     CAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAG                         GTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
genomic: CAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAGgtaacttttc ... ttttgtgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
EST: gi|13789871|gb|BG652462.1|BG652462
EST:     CAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAG                         GTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
genomic: CAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAGgtaacttttc ... ttttgtgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
EST: gi|48575415|gb|CO036392.1|CO036392
EST:     CAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAG                         GTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
genomic: CAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAGgtaacttttc ... ttttgtgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
EST: gi|13787516|gb|BG650108.1|BG650108
EST:     CAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAG                         GTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA
genomic: CAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAGgtaacttttc ... ttttgtgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattattaaattcgaagtgtcttaccagatgtgggttgatttggttttgtgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAAGGCATATTGGATAACTATGTTTTCGTGGGTGTCATCAGTGCTACTGTTT
     attaaatt  TA-rich tract