Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtgcttgattaacaaataaggaagttttggagttttgtttcaaatgttgtagagatttgttcctatattttattgataattgatgatatgctaaaatctaattaatttgtgtttacttgttgacagAGCCACATGGGAGAAATGTTTGCTTTCCATGCGACAACAACGTCTAACACTCTTAATACTCCTATTATTGTTTTCACCAGAACAGGATCCATGGCTATTC

Basic information

species Glycine max
transcript GLYMA11G04490.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G04490.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv02s0012g01170.t01 (Vitis vinifera), 3'ss of exon 9
gtgtgtgcttgattaacaaataaggaagttttggagttttgtttcaaatgttgtagagatttgttcctatattttattgataattgatgatatgctaaaatctaattaatttgtgtttacttgttgacagAGCCACATGGGAGAAATGTTTGCTTTCCATGCGACAACAACGTCTAACACTCTTAATACTCCTATTATTGTTTTCACCAGAACAGGATCCATGGCTATTC
                             | |   ||   | |   | || | | |    |     || | | ||||     ||   | |     | | |||| |||| ||| |   || |  || |||||| || |||||   |||||||||||||||||| || || | | ||||||||||||||||||| || ||||| || || ||||| ||||||||||||||  
-----------------------------tgtctggtccaggtctgattgatatggtc-ctaaccactgtgtattatattccatatctaagtccatcacatctgattactttcttggtattcttttacagAGTCATATGGGTACAATGTTTGCTTTCCATGCCACCACTATGGCTAACACTCTTAATACTCCCATCATTGTCTTTACAAGAACTGGATCCATGGCTATAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgataattgatgatatgctaaaatctaattaatttgtgtttacttgttgacagAGCCACATGGGAGAAATGTTTGCTTTCCATGCGACAACAACGTCTAACACTCTTAATACTCCTATTATTGTTTTCACCAGAACAGGATCCATGGCTATTC
                                        tttactt  CT-rich tract
                    taaaatctaattaatt  TA-rich tract