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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaatttttttgtttttcatgactcccttgcatgttctttttggttatttgctcataataaatattgaattcctagtcattttgtttttagATGGTGGAAGGAGCCTTTGGGAGAATGCTTGGCGTACCTGCATGGAAAGGCAACATGGTCAAAAATCTCATCCTGCTAACCCAGAAACACCTCTGCAATC

Basic information

species Glycine max
transcript GLYMA11G03650.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254319467|gb|GR830718.1|GR830718
EST:     AGGCACAGTACCGGATGAGGCTTATATGATATCAGCTTTTGGAGGATCAG                         ATGGTGGAAGGAGCCTTTGGGAGAATGCTTGGCGTACCTGCATGGAAAGGC
genomic: AGGCACAGTACCGGATGAGGCTTATATGATATCAGCTTTTGGAGGATCAGgttaattttt ... ttgtttttagATGGTGGAAGGAGCCTTTGGGAGAATGCTTGGCGTACCTGCATGGAAAGGC
EST: gi|254331094|gb|GR842359.1|GR842359
EST:     AGGCACAGTACCGGATGAGGCTTATATGATATCAGCTTTTGGAGGATCAG                         ATGGTGGAAGGAGCCTTTGGGAGAATGCTTGGCGTACCTGCATGGAAAGGC
genomic: AGGCACAGTACCGGATGAGGCTTATATGATATCAGCTTTTGGAGGATCAGgttaattttt ... ttgtttttagATGGTGGAAGGAGCCTTTGGGAGAATGCTTGGCGTACCTGCATGGAAAGGC
EST: gi|207836141|gb|GD808770.1|GD808770
EST:     TACCGGATGAGGCTTATATGATATCAGCTTTTGGAGGATCAG                         ATGGTGGAAGGAGCCTTTGGGAGAATGCTTGGCGTACCTGCATGGAAAGGC
genomic: TACCGGATGAGGCTTATATGATATCAGCTTTTGGAGGATCAGgttaattttt ... ttgtttttagATGGTGGAAGGAGCCTTTGGGAGAATGCTTGGCGTACCTGCATGGAAAGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttttggttatttgctcataataaatattgaattcctagtcattttgtttttagATGGTGGAAGGAGCCTTTGGGAGAATGCTTGGCGTACCTGCATGGAAAGGCAACATGGTCAAAAATCTCATCCTGCTAACCCAGAAACACCTCTGCAATC
                                           ttttgttttt  CT-rich tract
        ttatttgctcataata  TA-rich tract