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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagacacttgttatcgatacatatttgaacttttttaattcactagatgttttgattcattaaataactctcctggtgaagcattagttgctagtttttgtcaatttacagaatgtctctgaatttggctgaggtaactaactaacatgtaggagattttacagGTTGTTCAATTGACAAAATTTGACTACAGACTTGCAAATAACCTTGATGATGAGCTACAAAAACTACGTTGCCGCGTTAATTTTCATGCTTTGAGATTTA

Basic information

species Glycine max
transcript GLYMA11G03640.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G03640.1 (Glycine max), 3'ss of exon 6
lower sequence: AT4G16650.1 (Arabidopsis thaliana), 3'ss of exon 5
gtatagacacttgttatcgatacatatttgaacttttttaattcactagatgttttgattcattaaataactct-cctggtgaagcattagttgctagtttttgtcaatttacagaatgtctctgaatttggctgaggtaactaactaacatgtag-gagattttacagGTTGTTCAATTGACAAAATTTGACTACAGACTTGCAAATAACCTTGATGATGAGCTACAAAAACTACGTTGCCGCGTTAATTTTCATGCTTTGAGATTTA
                                      ||  ||||   |   |   |||  || | | ||| |  |   |  |    ||| |  || | ||  ||  ||||      || |    || |        || |||| | |  | |   || || || |||||| | ||||||||||| |||||||||||||| |||||| | || ||||| ||  | |||||  | || ||| | || || | ||||||||| ||||| |
-------------------------------gtaagactatgtcacctaagaatcaaattgttttagttactttatcaaatagaatcataggtattactattcatc--ttta------gttttatcatctta------tagctaattcatgtttgttgaaatcttgcagGTTTTACAATTGACAAAGTTTGACTACAGACTAGCAAATGATCTAGATGAAGACATGCAAAAGTTGCGCTGCAGGGTCAACTATCATGCTTTAAGATTCA

upper sequence: GLYMA11G03640.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv00s0229g00100.t01 (Vitis vinifera), 3'ss of exon 5
gtatagacacttgttatcgatacatatttgaacttttttaattcactagatgttttgattcattaaataactctcctggtgaagcattagttgctagtttttgtcaatttacagaatgtctctgaatttggctgaggtaac-taactaacatgtaggagattttacagGTTGTTCAATTGACAAAATTTGACTACAGACTTGCAAATAACCTTGATGATGAGCTACAAAAACTACGTTGCCGCGTTAATTTTCATGCTTTGAGATTTA
                                                                |  ||||| |  |  | ||||   |||      ||| | |   ||||     |  ||   ||||||  |    | |   || |||    | | | ||||| |||||||| || |||||||| ||||| ||||| |||||||||||| ||||||| ||||| |||||  | |||||||| || |||| ||||||||| ||||| |
----------------------------------------------------------------atgtaact-tggttttcaagctagagtgatgtatttattt---tttattttgtaccttccaatttgttttcaatgaggcaattaatgctttgaaaattttgcagGTTGTACAGTTGACAAAGTTTGATTACAGGCTTGCAAATAACATTGATGAAGAGCTGCAAAAGTTGCGTTGCCGGGTCAATTATCATGCTTTAAGATTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaatgtctctgaatttggctgaggtaactaactaacatgtaggagattttacagGTTGTTCAATTGACAAAATTTGACTACAGACTTGCAAATAACCTTGATGATGAGCTACAAAAACTACGTTGCCGCGTTAATTTTCATGCTTTGAGATTTA
                              aactaac  putative branch site (score: 1)
                                            agatttta  TA-rich tract