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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctcctatctaaaccctctgttttatagctgtttaattgttaggaaggatttgagagttgtgtacaatcttttgtaaacagtcagtctcacccaaatatttgttttgaaatttttcagCTATTCAAGACATTTCCAAATGCAACAAAGTATCTCAAGA

Basic information

species Glycine max
transcript GLYMA11G02030.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G02030.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os01g48910.1 (Oryza sativa), 3'ss of exon 6
gttctcctatctaaaccctctgttttatagctgtttaattgttaggaaggatttgagagttgtgtacaatcttttgtaaacagtcagtctcacccaaatatttgttttgaaatttttcagCTATTCAAGACATTTCCAAATGCAACAAAGTATCTCAAGA
            ||||    || |||  |  | |||| |||| |    | |||||       | || |  || | |  ||   ||  | | | |  |  |   | | |||   ||||||| |  ||||||||||||||||||||||||||||| | ||||
------------aaacgtgttggttt-catatattta-ttgtaaaatggtatttgccgtgcttttata--ctatggacaatcttctttgtgatctgagaa---gctctgat-cttttcagGTGCTCAAGACATTTCCAAATGCAACAAAGTATTTGAAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192305656|gb|FG998356.1|FG998356
EST:     GCCATTCAGAGATCTCAATTGCATTTGCAGAAGAGAAGAAGATACCTGAG                         CTATTCAAGGCATTTCCAAATGCAACAAAGTATCTCAAGA
genomic: GCCATTCAGAGATCTCAATTGCATTTGCAGAAGAGAAGAAGATACCTGAGgttctcctat ... aatttttcagCTATTCAAGACATTTCCAAATGCAACAAAGTATCTCAAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaatcttttgtaaacagtcagtctcacccaaatatttgttttgaaatttttcagCTATTCAAGACATTTCCAAATGCAACAAAGTATCTCAAGA
                     gtctcac  putative branch site (score: 3)
                                               tttttc  putative PPT
                              aaatatttgttttgaa  TA-rich tract