1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgcatgtatagccttcaaacttttaagataaataaaacttgacttccatcatttgtttctggattattgactacccttctaattaaatttcaactttcagACATACACACCAGAAAGCCCTGCTGATGCTACAAGAAATCTGTCTCAGCAAAATCTAAATGCCCTTGTTAAGGTTCTTCCTGGTCTACTTGGTGGTAGTG
species | Glycine max |
transcript | GLYMA10G43990.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGGCTATTATTACTGGCGAATTACCAGCTGGTTGGGAGAAAGCACTTCCG ACATACACACCAGAAAGCCCTGCTGATGCTACAAGAAATCTGTCTCAGCAAEST: gi|16281604|gb|BI944573.1|BI944573
genomic: AGGCTATTATTACTGGCGAATTACCAGCTGGTTGGGAGAAAGCACTTCCGgtgagtaaac ... caactttcagACATACACACCAGAAAGCCCTGCTGATGCTACAAGAAATCTGTCTCAGCAA
EST: AGGCTATTATTACTGGCGAATTACCAGCTGGTTGGGAGAAAGCACTTCCG ACATACACACCAGAAAGCCCTGCTGATGCTACAAGAAATCTGTCTCAGCAAEST: gi|16283998|gb|BI945852.1|BI945852
genomic: AGGCTATTATTACTGGCGAATTACCAGCTGGTTGGGAGAAAGCACTTCCGgtgagtaaac ... caactttcagACATACACACCAGAAAGCCCTGCTGATGCTACAAGAAATCTGTCTCAGCAA
EST: AGGCTATTATTACTGGCGAATTACCAGCTGGTTGGGAGAAAGCACTTCCG ACATACACACCAGAAAGCCCTGCTGATGCTACAAGAAATCTGTCTCAGCAAEST: gi|16278838|gb|BI943121.1|BI943121
genomic: AGGCTATTATTACTGGCGAATTACCAGCTGGTTGGGAGAAAGCACTTCCGgtgagtaaac ... caactttcagACATACACACCAGAAAGCCCTGCTGATGCTACAAGAAATCTGTCTCAGCAA
EST: AGGCTATTATTACTGGCGAATTACCAGCTGGTTGGGAGAAAGCACTTNCG ACATACACACCAGAAAGCCCTGCTGATGCTANCA-GAAATCTGTCTCAGCA
genomic: AGGCTATTATTACTGGCGAATTACCAGCTGGTTGGGAGAAAGCACTTCCGgtgagtaaac ... caactttcagACATACACACCAGAAAGCCCTGCTGATGCTA-CAAGAAATCTGTCTCAGCA
ccatcatttgtttctggattattgactacccttctaattaaatttcaactttcagACATACACACCAGAAAGCCCTGCTGATGCTACAAGAAATCTGTCTCAGCAAAATCTAAATGCCCTTGTTAAGGTTCTTCCTGGTCTACTTGGTGGTAGTG
ttctaat putative branch site (score: 2)
ctttc putative PPT
ttctaattaaatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcatgtatagccttcaaacttttaagataaataaaacttgacttccatcatttgtttctggattattgactacccttctaattaaatttcaactttcagACATACACACCAGAAAGCCCTGCTGATGCTACAAGAAATCTGTCTCAGCAAAATCTAAATGCCCTTGTTAAGGTTCTTCCTGGTCTACTTGGTGGTAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
-gcatgta
- - - - -agccttc
- - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - -ccatcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - gtttctg