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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgccaaaatcataagcttgatcacccacttggtatatctgtgtcattatatttcttatgcctgcgctaaattgctccttttttggtactgttatggcttagGAGGAAGAAATTAACGGAGTTGATTTTATTATAATTGCTAGTGATGGCCTCTGGAATGTCATATCAAACAAGGTGAGACTATCTTACTTGCTAAAGTTGG

Basic information

species Glycine max
transcript GLYMA10G43810.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208189453|gb|GD987693.1|GD987693
EST:     TTGGAGACAAATTTCTTAAGCCCTATGTTGTTGCTGACCCAGAAATTCAG                         GAGGAAGAAATTAACGGAGTTGATTT
genomic: TTGGAGACAAATTTCTTAAGCCCTATGTTGTTGCTGACCCAGAAATTCAGgttgccaaaa ... tatggcttagGAGGAAGAAATTAACGGAGTTGATTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatttcttatgcctgcgctaaattgctccttttttggtactgttatggcttagGAGGAAGAAATTAACGGAGTTGATTTTATTATAATTGCTAGTGATGGCCTCTGGAATGTCATATCAAACAAGGTGAGACTATCTTACTTGCTAAAGTTGG
                 cgctaaa  putative branch site (score: 3)
                    taaatt  TA-rich tract