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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatgtctttgtattctcattttgcataccgttatgtaatgtggcaataacaataacttaatctatgtttctttatatttaagcttagatgtttgtgacagTTGTTTTGCGCATGATAAGCTTTGGATTCGATTTTCACTGGAGTAATCAAAATTCTCATTTTGATCAGGAG

Basic information

species Glycine max
transcript GLYMA10G41940.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G41940.2 (Glycine max), 3'ss of exon 6
lower sequence: AT1G57600.1 (Arabidopsis thaliana), 3'ss of exon 6
aatgtctttgtattctcattttgcat-accgttatgtaatgtggcaataacaataacttaatctatgtttctttatatttaagcttagatgtttgtgacagTTGTTTTGCGCATGATAAGCTTTGGATTCGATTTTCACTGGAGTAATCAAAATTCTCATTTTGATCAGGAG
  | |  || ||| | |  |   | | || |  || |  | ||  || ||||  ||  |       || | |   | || |   ||| |  |||||  ||||||||||||||||| |||| |||||||  |||| |||||||||  | |   ||||||||||||||||||||
-gtattgttttatccactctacacttgactgcaattttctatgtgaaaaaca-caatctggctggagtatgt---tgttca--tttataattttgttgcagTTGTTTTGCGCATGTTAAGTTTTGGATATGATTATCACTGGAGCCAACTGGATTCTCATTTTGATCAGGAG

upper sequence: GLYMA10G41940.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv00s0507g00010.t01 (Vitis vinifera), 3'ss of exon 6
aatgtctttgtattctcattttgcataccgttatgtaatgtggcaataacaataacttaatctat-gtttctttatatttaagcttagatgttt-----gtgacagTTGTTTTGCGCATGATAAGCTTTGGATTCGATTTTCACTGGAGTAATCAAAATTCTCATTTTGATCAGGAG------------------
   |     || ||  ||  ||| | |   |||   ||      ||||  | |    ||  |  | |||| || |   ||    | || | | |      |||||||| ||||||||||||||||||||||||  ||||| || |||    || || ||||||||||||||||| ||                  
---gctaaagtttttccaaattgtaaat--ttagagaaca-aaaaatattacttctctagacggttgttttttcaagcttggtttcaggtttattttgtatgacagTTATTTTGCGCATGATAAGCTTTGGATATGATTTCCATTGGGCACATGAAGATTCTCATTTTGATCAGAAGGTATTCATTTTTCTGTGA

upper sequence: GLYMA10G41940.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv00s0559g00010.t01 (Vitis vinifera), 3'ss of exon 9
aatgtctttgtattctcattttgcataccgttatgtaatgtggcaataacaataacttaatcta--tgtttctttatatttaagcttagatgttt-----gtgacagTTGTTTTGCGCATGATAAGCTTTGGATTCGATTTTCACTGGAGTAATCAAAATTCTCATTTTGATCAGGAG------------------
  || ||    |||  ||  ||| | |  |      |    |||||  |  ||  ||  || |   ||||| |  |  | |    | || | | |      |||||||| ||||||||||||||||||||||||  ||||| || |||    ||||| ||||||||||||||||| ||                  
--tg-ctaaagatttccaaattgtaaattg----agagaacggcaaatattatttctctatatggttgtttttccaagtctggtttcaggtttattttgtatgacagTTATTTTGCGCATGATAAGCTTTGGATATGATTTCCATTGGGCACATCAAGATTCTCATTTTGATCAGAAGATATTCTTTTTTCTGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataacaataacttaatctatgtttctttatatttaagcttagatgtttgtgacagTTGTTTTGCGCATGATAAGCTTTGGATTCGATTTTCACTGGAGTAATCAAAATTCTCATTTTGATCAGGAG
     aataacttaatctatg  TA-rich tract