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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatataaatgtgctaccccttagtgcattttccatatgagagggattgaatttctctagttacttatgaatataaatatgatatacttaaaatttgtccagGATGGCTTATGCATTCTCTAGAGATGGGGCCATGCCATTGTCATCATTGTGGCACAAAGTTAACAAGCAGGAG

Basic information

species Glycine max
transcript GLYMA10G41560.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G41560.2 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G309163_T01 (Zea mays), 3'ss of exon 6
--------------gtatataaatgtgc-taccccttagtgcattt-tccatatgagagggattgaatttctctagttacttatgaatataa-atatgatatacttaaaatttgt--ccagGATGGCTTATGCATTCTCTAGAGATGGGGCCATGCCATTGTCATCATTGTGGCACAAAGTTAACAAGCAGGAG---------------------------
               |  ||  || ||| | ||    | |  ||   |||||     |  || |||   |  |||| | |     | |  |      | | |  ||    | ||   |||||||| ||||||| ||||| ||||||||||| ||||| || || ||  | ||||||||||||||| |||| |||                           
gtgatgcatgctagcttgatcgatctgcctgcctgccactcgatcgatccatgcactactgactga---tggctagctgcactgcactgcactgcgggctttcttttttttctgctgccagGATGACTTATGCGTTCTCGAGAGATGGGGCGATGCCGTTTTCGTCCGTCTGGCACAAAGTTAACGAGCAAGAGGTGCCGGTAAACGCCGTCTGGCTCTCG

upper sequence: GLYMA10G41560.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv01s0011g04210.t01 (Vitis vinifera), 3'ss of exon 6
gtatataaatgtgctaccccttagtgcattttccatatgagagggattgaattt----ctctagttacttatgaatataaatatgatatacttaaaatttgtccagGATGGCTTATGCATTCTCTAGAGATGGGGCCATGCCATTGTCATCATTGTGGCACAAAGTTAACAAGCAGGAG---------------------------
     |||   ||||      |  |   || || |||||| | |||||  | ||     | || || ||||   |  ||   | |||      ||    |   ||||||||||||||| |||||||||||||| || ||||| || ||  | |||||||| ||||| |||   ||||||                           
----gtaaccatgctcattactgatttcttctc-atatgacaaggatttcacttgggattttaattccttagagacctactgaagatgctgaaaattccttctcagGATGGCTTATGCTTTCTCTAGAGATGGTGCAATGCCTTTTTCGCCCTTGTGGCATAAAGTGAACTCACAGGAGGTCCCCATAAATGCAGTTTGGCTTTCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaatttctctagttacttatgaatataaatatgatatacttaaaatttgtccagGATGGCTTATGCATTCTCTAGAGATGGGGCCATGCCATTGTCATCATTGTGGCACAAAGTTAACAAGCAGGAG
                                              tttgtcc  CT-rich tract
          tagttacttatgaata  TA-rich tract