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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattcaatccgattcttttttattagctctgaattggttagaattaattgattatgtatcagcgttgtatttgagatttgaaaacatttttggttagtcaaggataaagctgttttcttcagtttaaaaatatgtaatttctatgtttgatcttggcagAACTTCCAGAAAGATCTTATGGCGCTGACTGTCGTATATATCTGCCTGAAAACCCTGCAAGCAGGTTTAAGAATGTTTAT

Basic information

species Glycine max
transcript GLYMA10G41430.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G41430.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 3'ss of exon 6
gtaattcaatccgattctttt---ttattagctctgaa--ttggttagaattaattgattatgtatcagcgttgtatttgagatttgaaaacatttttggttagtcaaggataaagctgttttcttcagtttaaaaatatgta------atttcta--tgtttg---atcttggcagAACTTCCAGAAAGATCTTATGGCGCTGACTGTCGTATATATCTGCCTGAAAACCCTGCAAGCAGGTTTAAGAATGTTTAT
||||| || |   | | |       | |   |||||||  ||  ||   ||  |||  ||   | |      |||| |  |  ||        | |||| | || ||  ||| |   | ||  || ||  || || || |||        ||| ||  | ||||     |||  |||||||||| |||||||| ||||| ||||| || || || ||| |||||||||| ||  | |||||||||||||||||||||
gtaatgcatttgaactttgccaaactctcccctctgaacattacttgacatggattagtttgttttgctttctgtaatgcaccttctcttttgtatttgctgagaca--gattagcttattgactgcatattcaagatctgtctagatcgtttttaactatttgtatgacttaacagAACTTCCTGAAAGATCGTATGGTGCTGATTGCCGCATTTATGTGCCTGAAAATCCAACCAGCAGGTTTAAGAATGTTTAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaagctgttttcttcagtttaaaaatatgtaatttctatgtttgatcttggcagAACTTCCAGAAAGATCTTATGGCGCTGACTGTCGTATATATCTGCCTGAAAACCCTGCAAGCAGGTTTAAGAATGTTTAT
                                        gtttgat  putative branch site (score: 5)
                  tttaaaaatatgtaat  TA-rich tract