1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cagagaattgtttaaacttcaaagcattgtaataagttttcatacatcaaattcctagaacacaagtattcataatatatgtatatatctgtttcataagATGTAGAGGGTCAGGAACACCGAAAAGTGTCATTGCAACGATATCTTGAAAAGCGTAAGGACAG
species | Glycine max |
transcript | GLYMA10G38970.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAGTATCCTCTTGCAATATAGGGAGAAAGGGAGCATAGCTCGTGATGCTG ATGTAGAGGGTCAGGAACACCGAAAEST: gi|193545393|gb|FK499952.1|FK499952
genomic: GAGTATCCTCT-GCAATATAGGGAGAAAGGGAGCATAGCTCGTGATGCTGgtaagtatta ... gtttcataagATGTAGAGGGTCAGGAACACCGAAA
EST: GGAGTATCCTCTGCAATATAGGGAGAAAGGGAGCATAGCTCGTGATGCTG ATGTAGAGGGTCAGGAACACCGAAAAGTGTCATTGCAACGATATCTTGAAA
genomic: GGAGTATCCTCTGCAATATAGGGAGAAAGGGAGCATAGCTCGTGATGCTGgtaagtatta ... gtttcataagATGTAGAGGGTCAGGAACACCGAAAAGTGTCATTGCAACGATATCTTGAAA
atcaaattcctagaacacaagtattcataatatatgtatatatctgtttcataagATGTAGAGGGTCAGGAACACCGAAAAGTGTCATTGCAACGATATCTTGAAAAGCGTAAGGACAG
tctgtttc CT-rich tract
tattcataatatatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagagaattgtttaaacttcaaagcattgtaataagttttcatacatcaaattcctagaacacaagtattcataatatatgtatatatctgtttcataagATGTAGAGGGTCAGGAACACCGAAAAGTGTCATTGCAACGATATCTTGAAAAGCGTAAGGACAG
- - - - - - - - - -caaagca
- - - - - - - - - - - - - - - - - - - - catacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacacaag