1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...catagtacctagatcttgtccataagtaattattctaacccatttatcaattaatgctaatgaccaaatgcttttatcgtgcttttctatgataccatagGGACTACTAAACTGAAGAACTTTGAAAACAACATTGGATCTCTGACTGTGAAGCTTACAGAAGAAGATTTGAGGGAACTTTCTGAAGCAGTTCCTGTTTA
species | Glycine max |
transcript | GLYMA10G38900.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGCCTTAGCATGGCTTCTCCATCAGGGAAATGACATAATCCCTATACCTG GGACTACTAAACTGAAGAACTTTGAAAACAACATTGGATCTCTGACTGTGAEST: gi|58018266|gb|CX705008.1|CX705008
genomic: AGCCTTAGCATGGCTTCTCCATCAGGGAAATGACATAATCCCTATACCTGgtagtgtctt ... gataccatagGGACTACTAAACTGAAGAACTTTGAAAACAACATTGGATCTCTGACTGTGA
EST: AGCCTTAGCATGGCTTCTCCATCAGGGAAATGACATAATCCCTATACCTG GGACTACTAAACTGAAGAACTTTGAAAACAACATTGGATCTCTGACTGTGAEST: gi|6846802|gb|AW349092.1|AW349092
genomic: AGCCTTAGCATGGCTTCTCCATCAGGGAAATGACATAATCCCTATACCTGgtagtgtctt ... gataccatagGGACTACTAAACTGAAGAACTTTGAAAACAACATTGGATCTCTGACTGTGA
EST: AGCCTTAGCATGGCTTCTCCATCAGGGAAATGACATAATCCCTATACCTG GGACTACTAAACTGAAGAACTTTGAAAACAACATTGGATCTCTGACTGTGAEST: gi|31310343|gb|CD395546.1|CD395546
genomic: AGCCTTAGCATGGCTTCTCCATCAGGGAAATGACATAATCCCTATACCTGgtagtgtctt ... gataccatagGGACTACTAAACTGAAGAACTTTGAAAACAACATTGGATCTCTGACTGTGA
EST: AGCCTTAGCATGGCTTCTCCATCAGGGAAATGACATAATCCCTATACCTG GGACTACTAAACTGAAGAACTTTGAAAACAACATTGGATCTCTGACTGTGA
genomic: AGCCTTAGCATGGCTTCTCCATCAGGGAAATGACATAATCCCTATACCTGgtagtgtctt ... gataccatagGGACTACTAAACTGAAGAACTTTGAAAACAACATTGGATCTCTGACTGTGA
atcaattaatgctaatgaccaaatgcttttatcgtgcttttctatgataccatagGGACTACTAAACTGAAGAACTTTGAAAACAACATTGGATCTCTGACTGTGAAGCTTACAGAAGAAGATTTGAGGGAACTTTCTGAAGCAGTTCCTGTTTA
tgctaat putative branch site (score: 2)
ttttctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catagtacctagatcttgtccataagtaattattctaacccatttatcaattaatgctaatgaccaaatgcttttatcgtgcttttctatgataccatagGGACTACTAAACTGAAGAACTTTGAAAACAACATTGGATCTCTGACTGTGAAGCTTACAGAAGAAGATTTGAGGGAACTTTCTGAAGCAGTTCCTGTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - cttgtcc
- - - - - - - - - - - - - - - - - ctaaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gctaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaatgc