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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgcatattgtgcatttgttgattcgaaaacttttgtccataagtaagattgcataagtagttgttataagcttaatcatatatttctttgattctatagGGACTACTAAAATCAAGAACCTTGAAAACAACGTTGGATCTGTGGCTGTGAAACTTACAAATGCAGAGTTGAGTGAAATTTCTGATGCAGTTCCTGTTTA

Basic information

species Glycine max
transcript GLYMA10G38890.3
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22525129|gb|BU083940.1|BU083940
EST:     AGCCTTAGCATGGTTTCTCCATCAGGGAAATGACATAGTCCCTATCCCTG                         GGACTACTAAAATCAAGAACCTTGAAAACAACGNTGGATCTGTGGCTGTGA
genomic: AGCCTTAGCATGGTTTCTCCATCAGGGAAATGACATAGTCCCTATCCCTGgtagtgtctt ... gattctatagGGACTACTAAAATCAAGAACCTTGAAAACAACGTTGGATCTGTGGCTGTGA
EST: gi|6726380|gb|AW310734.1|AW310734
EST:     AGCCTTAGCATGGTTTCTCCATCAGGGAAATGACATAGTCCCTATCCCTG                         GGACTACTAAAATCAAGAACCTTGAAAACAACGTTGGATCTGTGGCTGTGA
genomic: AGCCTTAGCATGGTTTCTCCATCAGGGAAATGACATAGTCCCTATCCCTGgtagtgtctt ... gattctatagGGACTACTAAAATCAAGAACCTTGAAAACAACGTTGGATCTGTGGCTGTGA
EST: gi|7232344|gb|AW567701.1|AW567701
EST:     AGCCTTAGCATGGTTTCTCCATCAAGGAAATGACATAGTCCCTATCCCTG                         GGACTACTAAAATCAAGAACCTTGAAAACAACGTTGGATCTGTGGCTGTGA
genomic: AGCCTTAGCATGGTTTCTCCATCAGGGAAATGACATAGTCCCTATCCCTGgtagtgtctt ... gattctatagGGACTACTAAAATCAAGAACCTTGAAAACAACGTTGGATCTGTGGCTGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagattgcataagtagttgttataagcttaatcatatatttctttgattctatagGGACTACTAAAATCAAGAACCTTGAAAACAACGTTGGATCTGTGGCTGTGAAACTTACAAATGCAGAGTTGAGTGAAATTTCTGATGCAGTTCCTGTTTA
                                      tttctttg  CT-rich tract
                           ttaatcatatatttct  TA-rich tract