1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgtgggttatgttcaaaatattagagggctacccaatctgattttacacacagcttcatcaatgtctttgtttacagTTGGCAGCACCTGAGGAACATCTGCTTGTTTCCAGCTCTTTGGACAGAACTTTACGAGTCTGGGACTTAAGAAT
species | Glycine max |
transcript | GLYMA10G38860.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTTGGCGAGCTCATGATGGATATGTGACAAAG TTGGCAGCACCTGAGGAACATCTGCTTGTTTCCAGCTCTTTGGACAGAACTEST: gi|51338005|gb|CO981871.1|CO981871
genomic: CTTGGCGAGCTCATGATGGATATGTGACAAAGgtatgtgggt ... ttgtttacagTTGGCAGCACCTGAGGAACATCTGCTTGTTTCCAGCTCTTTGGACAGAACT
EST: GTGGAAATGTCATTTCCTCTTGGCGAGCTCATGATGGATATGTGACAAAG TTGGCAGCACCTGAGGAACATCTGCTTGTTTCCAGCTCTTTGGACAGAACT
genomic: GTGGAAATGTCATTTCCTCTTGGCGAGCTCATGATGGATATGTGACAAAGgtatgtgggt ... ttgtttacagTTGGCAGCACCTGAGGAACATCTGCTTGTTTCCAGCTCTTTGGACAGAACT
agagggctacccaatctgattttacacacagcttcatcaatgtctttgtttacagTTGGCAGCACCTGAGGAACATCTGCTTGTTTCCAGCTCTTTGGACAGAACTTTACGAGTCTGGGACTTAAGAAT
atctgat putative branch site (score: 4)
tctttgttt putative PPT
tgatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgggttatgttcaaaatattagagggctacccaatctgattttacacacagcttcatcaatgtctttgtttacagTTGGCAGCACCTGAGGAACATCTGCTTGTTTCCAGCTCTTTGGACAGAACTTTACGAGTCTGGGACTTAAGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC