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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggattttttcacagtaaaatattccagttggtctgatcattaatataaaatgtctactgctcacctgaaaatttgctacataatcagGTCATTGAACCTGATGTTCAGCCCAGTGATTTATGCACACGCCGTGAGTATGCTCGATGGTTAGTGTCTGCTAGTAGTGCTCTATCAAG

Basic information

species Glycine max
transcript GLYMA10G37850.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G37850.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv16s0050g00600.t01 (Vitis vinifera), 3'ss of exon 4
-----------gtttggattttttcacagtaaaatattccagttggtctgatcat-taatataaaatgtctactgctcacctgaaaatttgctacataatcagGTCATTGAACCTGATGTTCAGCCCAGTGATTTATGCACACGCCGTGAGTATGCTCGATGGTTAGTGTCTGCTAGTAGTGCTCTATCAAG
             |||   | ||    || |  || |  |  |   ||||  ||    || | ||   |  | || |    | | | | |   |  |  ||||||||| |||||||||||||| || || ||| |||| ||||| ||||||| |||||| ||||| || ||||| ||||||| ||| |||||
ctattaactctagttgtgctgttctctag-aggatttaactctgaatctgtgcagaccatgtgaagcttgaattgat--tttaatattgttaaatcttttcagGTCATCGAACCTGATGTTCAACCTAGCGATCTATGTACACGTCGTGAGTTTGCTCGTTGGTTGGTTTCTGCAAGTAGTGTTCTTTCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgatcattaatataaaatgtctactgctcacctgaaaatttgctacataatcagGTCATTGAACCTGATGTTCAGCCCAGTGATTTATGCACACGCCGTGAGTATGCTCGATGGTTAGTGTCTGCTAGTAGTGCTCTATCAAG
                         tgctcac  putative branch site (score: 2)
      attaatataaaatgtc  TA-rich tract