1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctatatcaattcatgtctatgatatttgtttgtttttttaatgcagatcagaatgacagtagctaagtcttgtgtgtatatttctgtttgatttgtgcagGTCTAACTAAAGCTATTGCAAGACTCGTGCTTAAAAATGTCCAGCAG
species | Glycine max |
transcript | GLYMA10G37750.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
gatcagaatgacagtagctaagtcttgtgtgtatatttctgtttgatttgtgcagGTCTAACTAAAGCTATTGCAAGACTCGTGCTTAAAAATGTCCAGCAG
gtttgat putative branch site (score: 5)
tgtatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatatcaattcatgtctatgatatttgtttgtttttttaatgcagatcagaatgacagtagctaagtcttgtgtgtatatttctgtttgatttgtgcagGTCTAACTAAAGCTATTGCAAGACTCGTGCTTAAAAATGTCCAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - tcatgtc
- - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - -ttaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgt