1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...cagcttcagtattcacatcttgcattttccagtgacactaatattattttatgattcagttcttacttttacaatttctgacttttgtgacatatttcagGCAACATTGATTGTGGAGAATGTTCACCTTCATTTACTTCCATCAATGAATCCTGATGGTTTTAGTTTAAGAAAGCGTGGTAATGCTAATAATATTGATC
species | Glycine max |
transcript | GLYMA10G36590.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTATATTTTTGGCCAATTGGTTATGTGATAACCATTTGAAGGATCCTTTG GCAACATTGATTGTGGAGAGTGTTCACCTTCATTTACTTCCATCAATGAATEST: gi|193349690|gb|FK315658.1|FK315658
genomic: TTATATTTTTGGCCAATTGGTTATGTGATAACCATTTGAAGGATCCTTTGgtatttttgt ... catatttcagGCAACATTGATTGTGGAGAATGTTCACCTTCATTTACTTCCATCAATGAAT
EST: TTATA-TTTTGGCCAATTGGTTATGTGATAACCATTTGAAGGATCCTTTG GCAACATTGATTGTGGAGAATGTTCACCTTCATTTACTTCCATCAATGAAT
genomic: TTATATTTTTGGCCAATTGGTTATGTGATAACCATTTGAAGGATCCTTTGgtatttttgt ... catatttcagGCAACATTGATTGTGGAGAATGTTCACCTTCATTTACTTCCATCAATGAAT
attttatgattcagttcttacttttacaatttctgacttttgtgacatatttcagGCAACATTGATTGTGGAGAATGTTCACCTTCATTTACTTCCATCAATGAATCCTGATGGTTTTAGTTTAAGAAAGCGTGGTAATGCTAATAATATTGATC
ttctgac putative branch site (score: 2)
ttacttttacaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagcttcagtattcacatcttgcattttccagtgacactaatattattttatgattcagttcttacttttacaatttctgacttttgtgacatatttcagGCAACATTGATTGTGGAGAATGTTCACCTTCATTTACTTCCATCAATGAATCCTGATGGTTTTAGTTTAAGAAAGCGTGGTAATGCTAATAATATTGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
cagcttc
- - - - - attcaca
- - - - - - - - - - tgcattt
- - - - - - - - - - - - - - - - tgacact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgtg