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gtaattgtagttgaattgatttaatcttgtattttttagaactagtctagatcagttgatctttccttatattttttcttgtaacatctaacattgtgttagttatggttttctttgtctttgttgatgtttagGTTAGGTTCAGAGCTTACACCACAAAAACAATTGAAAGAGGAGGCAGAGATGGTGATGCAACAACTAATGACCTTTGTTCAATATACAGCT
species | Glycine max |
transcript | GLYMA10G36210.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AATCGTTGTAAAGATCCTCAATGGCACAACCTGGATCGCTATTTTGAGAA GTTAGGTACAGAGCTTACACCACAAAAAEST: gi|6666544|gb|AW278011.1|AW278011
genomic: AATCGTTGTAAAGATCCTCAATGGCACAACCTGGATCGCTATTTTGAGAAgtaattgtag ... tgatgtttagGTTAGGTTCAGAGCTTACACCACAAAAA
EST: AATCGTTGTAAAGATCCTCAATGGCACAACCTGGATCGCTATTTTGAGAA GTTAGGTTCAGAGCTTACACCACAAAAACAATTGAAAGAGGAGGCAGAGATEST: gi|208168740|gb|GD969192.1|GD969192
genomic: AATCGTTGTAAAGATCCTCAATGGCACAACCTGGATCGCTATTTTGAGAAgtaattgtag ... tgatgtttagGTTAGGTTCAGAGCTTACACCACAAAAACAATTGAAAGAGGAGGCAGAGAT
EST: AATCGTTGTAAAGATCCTCAATGGCACAACCTGGATCGCTATTTTGAGAA GTTAGGTACAGAGCTTACACCACAAAAACAATTGAAAGAGGAGGCAGAGAT
genomic: AATCGTTGTAAAGATCCTCAATGGCACAACCTGGATCGCTATTTTGAGAAgtaattgtag ... tgatgtttagGTTAGGTTCAGAGCTTACACCACAAAAACAATTGAAAGAGGAGGCAGAGAT
tgtaacatctaacattgtgttagttatggttttctttgtctttgttgatgtttagGTTAGGTTCAGAGCTTACACCACAAAAACAATTGAAAGAGGAGGCAGAGATGGTGATGCAACAACTAATGACCTTTGTTCAATATACAGCT
ttttctttgtctttgt CT-rich tract
ttagttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattgtagttgaattgatttaatcttgtattttttagaactagtctagatcagttgatctttccttatattttttcttgtaacatctaacattgtgttagttatggttttctttgtctttgttgatgtttagGTTAGGTTCAGAGCTTACACCACAAAAACAATTGAAAGAGGAGGCAGAGATGGTGATGCAACAACTAATGACCTTTGTTCAATATACAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG