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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgtggttttagtttgcctgtaatatattatgaagaattactatctcttgtaatctttttaaataattttcatattttttattattttttttgcttccttgtagACCGGTTATAGACCCTATTGCATCAATATTTCATCGAATGCTCTGTGGAAGATTAGATGCTTCTAATGATGCTCAAGGTTACACTCTAAGAGGTGAACCT

Basic information

species Glycine max
transcript GLYMA10G35620.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193420608|gb|FK390545.1|FK390545
EST:     GACCCAAGTGAGGATTTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAG                         ACCGGTTATAGACCCTATTGCATCAATATTTCATCGAATGCTCTGTGGAAG
genomic: GACCCAAGTGAGGATTTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAGgtaagttgtg ... ttccttgtagACCGGTTATAGACCCTATTGCATCAATATTTCATCGAATGCTCTGTGGAAG
EST: gi|208317901|gb|GE116668.1|GE116668
EST:     GACCCAAGTGAGGATTTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAG                         ACCGGTTATAG
genomic: GACCCAAGTGAGGATTTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAGgtaagttgtg ... ttccttgtagACCGGTTATAG
EST: gi|193563942|gb|FK520445.1|FK520445
EST:     GTGAGGATTTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAG                         ACCGGTTATAGACCCTATTGCATCAATATTTCATCGAATGCTCTGTGGAAG
genomic: GTGAGGATTTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAGgtaagttgtg ... ttccttgtagACCGGTTATAGACCCTATTGCATCAATATTTCATCGAATGCTCTGTGGAAG
EST: gi|207716491|gb|GD699659.1|GD699659
EST:     TTTCCCTGAG-TTTTAAG                         ACTTGGTTATAGACCCTATTGCATCAATATTTCATCGAATGCTCTGTGGAA
genomic: TTTCCCTGAGTTTTTAAGgtaagttgtg ... ttccttgtagAC-CGGTTATAGACCCTATTGCATCAATATTTCATCGAATGCTCTGTGGAA
EST: gi|207845233|gb|GD814830.1|GD814830
EST:     GACCCAAGTGAGGATTTTGCATTCTCTACTTTTT-CCCTGAGTTTTTAAG                         ACCGGTTATAG
genomic: GACCCAAGTGAGGATTTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAGgtaagttgtg ... ttccttgtagACCGGTTATAG
EST: gi|193712737|gb|FK652322.1|FK652322
EST:     TTTGCATTCTCTACTTTTTTCCCTGAG-TTTTAAG                         ACCGGTTATAGACCCTATCGCATCAATATTTACAATCGAATGCTCTGTGGA
genomic: TTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAGgtaagttgtg ... ttccttgtagACCGGTTATAGACCCTATTGCATCAATATTT-C-ATCGAATGCTCTGTGGA
EST: gi|207798201|gb|GD770025.1|GD770025
EST:     GACCCAAGTGAGGATTTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAG                         ACCGGTTATAGACCCTATTGCATCAATATTTCATCGAATGCTCTGTGGAAG
genomic: GACCCAAGTGAGGATTTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAGgtaagttgtg ... ttccttgtagACCGGTTATAGACCCTATTGCATCAATATTTCATCGAATGCTCTGTGGAAG
EST: gi|207718756|gb|GD700650.1|GD700650
EST:     CCCAAAGTAGAGGATTTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAG                         ACCGGTTATAGACCCTATTGCATCAATATTTCATCGAATGCTCTGTGGAAG
genomic: CCC-AAGT-GAGGATTTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAGgtaagttgtg ... ttccttgtagACCGGTTATAGACCCTATTGCATCAATATTTCATCGAATGCTCTGTGGAAG
EST: gi|193663878|gb|FK614200.1|FK614200
EST:     TTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAG                         ACCGGTTATAGACCCTATCGCATCAATATTTCATCGAATGCTCTGTGGAAG
genomic: TTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAGgtaagttgtg ... ttccttgtagACCGGTTATAGACCCTATTGCATCAATATTTCATCGAATGCTCTGTGGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatctttttaaataattttcatattttttattattttttttgcttccttgtagACCGGTTATAGACCCTATTGCATCAATATTTCATCGAATGCTCTGTGGAAGATTAGATGCTTCTAATGATGCTCAAGGTTACACTCTAAGAGGTGAACCT
                 ttttcatattttttat  CT-rich tract
      tttttaaataattttc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttgtggttttagtttgcctgtaatatattatgaagaattactatctcttgtaatctttttaaataattttcatattttttattattttttttgcttccttgtagACCGGTTATAGACCCTATTGCATCAATATTTCATCGAATGCTCTGTGGAAGATTAGATGCTTCTAATGATGCTCAAGGTTACACTCTAAGAGGTGAACCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG