Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgctcctaactcggtatataacattttcattttttgtaaaatctcttctgaaaaagtgaaaagttgtttttccttattcagCATTGGGTGGGTGAAAACCCAGCAATAATGGCAGTTGGTGTGGTTGATGGAGCTTCAGAGGCCATCTTCCATACTCTTATGACTCTTGATCCCTCAAGAT

Basic information

species Glycine max
transcript GLYMA10G35460.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35460.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G069976_T01 (Zea mays), 3'ss of exon 8
--gtaagttgctc-ctaactcggtatata-acattttcattttttgtaaaatctcttctgaaaaagtgaaaagttgtttttccttattcagCATTGGGTGGGTGAAAACCCAGCAATAATGGCAGTTGGTGTGGTTGATGGAGCTTCAGAGGCCATCTTCCATACTCTTATGACTCTTGATCCCTCAAGAT---
   ||  || ||| | |||  | | |  |  ||  |  |||| |||| ||||   |    || || |   | |||||||        |||| ||||||    |||  | || || |||||||||||||||||||||||||    ||| |||||  |||| || ||||| ||| | ||||  |  |||||||   
gtatatcttactcaccaacgtgttgtgcatgcacatggatttattgttaaattcat----aataatt---aggttgtttcc------tcagTATTGGG---ATGATCATCCGGCTATAATGGCAGTTGGTGTGGTTGATGCGAATTCCGAGGCTGTCTTTCAGACTCTAATGTCCCTTGGCCAATCAAGATCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattttttgtaaaatctcttctgaaaaagtgaaaagttgtttttccttattcagCATTGGGTGGGTGAAAACCCAGCAATAATGGCAGTTGGTGTGGTTGATGGAGCTTCAGAGGCCATCTTCCATACTCTTATGACTCTTGATCCCTCAAGAT
                                     ttgtttttccttattc  CT-rich tract
     ttttgtaaaat  TA-rich tract