1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gagtttgattctgctcttgaagaatttcacttgttgtacttgtagcataaagcatttgattccctgcagctaaaatggttttaaattttgaactttgcagATCAAGTATTCATATCTTGATGTTGTCGGCAGAACTGTGGTGGTTCTAGAAAAAAGAAATGCAGTTCCTGAGCATAATGCTCCTTTTCAG
species | Glycine max |
transcript | GLYMA10G35450.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCAAAGATCCCACAGTTGAGATTCCTTTTGAAGTGAAGCAACATCTAGAG ATCAAGTATTCATATCTTGATGTTGTCGGCAGAACTGTGGTGGTTCTAGAAEST: gi|254340867|gb|GR854595.1|GR854595
genomic: CCAAAGATCCCACAGTTGAGATTCCTTTTGAAGTGAAGCAACATCTAGAGgtaatgttct ... aactttgcagATCAAGTATTCATATCTTGATGTTGTCGGCAGAACTGTGGTGGTTCTAGAA
EST: CCAAAGATCCCACAGTTGAGATTCCTTTTGAAGTGAAGCAACATCTAGAG ATCAAGTATTCATATCTTGATGTTGTCGGCAGAACTGTGGTGGTTCTAGAAEST: gi|6725446|gb|AW309845.1|AW309845
genomic: CCAAAGATCCCACAGTTGAGATTCCTTTTGAAGTGAAGCAACATCTAGAGgtaatgttct ... aactttgcagATCAAGTATTCATATCTTGATGTTGTCGGCAGAACTGTGGTGGTTCTAGAA
EST: CCAAAGATCCCACAGTTGAGATTCCTTTTGAAGTGAAGCAACATCTAGAG ATCAAGTATTCATATCTTGATGTTGTCGGCAGAACTGTGGTGGTTCTAGAAEST: gi|58016041|gb|CX702783.1|CX702783
genomic: CCAAAGATCCCACAGTTGAGATTCCTTTTGAAGTGAAGCAACATCTAGAGgtaatgttct ... aactttgcagATCAAGTATTCATATCTTGATGTTGTCGGCAGAACTGTGGTGGTTCTAGAA
EST: CCAAAGATCCCACAGTTGAGATTCCTTTTGAAGTGAAGCAACATCTAGAG ATCAAGTATTCATATCTTGATGTTGTCGGCAGAACTGTGGTGGTTCTAGAAEST: gi|9259137|gb|BE347284.1|BE347284
genomic: CCAAAGATCCCACAGTTGAGATTCCTTTTGAAGTGAAGCAACATCTAGAGgtaatgttct ... aactttgcagATCAAGTATTCATATCTTGATGTTGTCGGCAGAACTGTGGTGGTTCTAGAA
EST: CCAAAGATCCCACAGTTGAGATTCCTTTTGAAGTGAAGCAACATCTAGAG ATCAAGTATTCATATCTTGATGTTGTCGGCAGAACTGTGGTGGTTCTAGNNEST: gi|58023148|gb|CX709889.1|CX709889
genomic: CCAAAGATCCCACAGTTGAGATTCCTTTTGAAGTGAAGCAACATCTAGAGgtaatgttct ... aactttgcagATCAAGTATTCATATCTTGATGTTGTCGGCAGAACTGTGGTGGTTCTAG-A
EST: CCAAAGATCCCCCAGTTGAGATTCCTTTTGAAGTGAAGCAACATCTAGAG ATCAAGTATTCATATCTTGATGTTGTCGGCAGAACTGTGGTGGTTCTAGAAEST: gi|38193187|gb|CF922393.1|CF922393
genomic: CCAAAGATCCCACAGTTGAGATTCCTTTTGAAGTGAAGCAACATCTAGAGgtaatgttct ... aactttgcagATCAAGTATTCATATCTTGATGTTGTCGGCAGAACTGTGGTGGTTCTAGAA
EST: CCAAAGATCCCACAGTTGAGATTCCTTTTGAAGTGAAGCAACATCTAGAG ATCAAGTATTCATATCTTGATGTTGTCGGCAGAACTGTGGTGGTTCTAGAA
genomic: CCAAAGATCCCACAGTTGAGATTCCTTTTGAAGTGAAGCAACATCTAGAGgtaatgttct ... aactttgcagATCAAGTATTCATATCTTGATGTTGTCGGCAGAACTGTGGTGGTTCTAGAA
cataaagcatttgattccctgcagctaaaatggttttaaattttgaactttgcagATCAAGTATTCATATCTTGATGTTGTCGGCAGAACTGTGGTGGTTCTAGAAAAAAGAAATGCAGTTCCTGAGCATAATGCTCCTTTTCAG
agctaaa putative branch site (score: 3)
taaaatggttttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagtttgattctgctcttgaagaatttcacttgttgtacttgtagcataaagcatttgattccctgcagctaaaatggttttaaattttgaactttgcagATCAAGTATTCATATCTTGATGTTGTCGGCAGAACTGTGGTGGTTCTAGAAAAAAGAAATGCAGTTCCTGAGCATAATGCTCCTTTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA