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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctctccctattttgtggtctttgctggcactaatttgcagatatgtactgatagtgtttcttacctaaggatatgttcgtctgtctcttgaccagGTTTTAGGTCCAAACATGCTGAAATGGTTATGTCCCACGGCAGTAAGCCATCTCAAGGACGGGGTTAGCTTCCCCACATTACGTGATAATTCTTAAACCT

Basic information

species Glycine max
transcript GLYMA10G35270.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22930152|gb|BU547291.1|BU547291
EST:     AAAGCTATCGGCATCCATTCAACATTGGCGCATACAAAAATATTACTTTG                         GTTTTAGGTCCAAACATGCTGAAATGGTTATGTCCCACGGCAGTAAGCCAT
genomic: AAAGCTATCGGCATCCATTCAACATTGGCGCATACAAAAATATTACTTTGgtctctccct ... tcttgaccagGTTTTAGGTCCAAACATGCTGAAATGGTTATGTCCCACGGCAGTAAGCCAT
EST: gi|193649644|gb|FK596781.1|FK596781
EST:     AAAGCTATCGGCATCCATTCAACATTGGCGCATACAAAAATATTACTTTG                         GTTTTAGGTCCAAACATGCTGAAATGGTTATGTCCCACGGCAGTAAGCCAT
genomic: AAAGCTATCGGCATCCATTCAACATTGGCGCATACAAAAATATTACTTTGgtctctccct ... tcttgaccagGTTTTAGGTCCAAACATGCTGAAATGGTTATGTCCCACGGCAGTAAGCCAT
EST: gi|31460788|gb|CD402816.1|CD402816
EST:     AAAGCTATCGGCATCCATTCAACATTGGCGCATACTAAAATATTACTTTG                         GTTTTAGGTCCCAACATGCTGAAATGGTTATGTTCCACGGCAGTAAGCCAT
genomic: AAAGCTATCGGCATCCATTCAACATTGGCGCATACAAAAATATTACTTTGgtctctccct ... tcttgaccagGTTTTAGGTCCAAACATGCTGAAATGGTTATGTCCCACGGCAGTAAGCCAT
EST: gi|193643011|gb|FK588165.1|FK588165
EST:     AAAGCTATCGGCATCCATTCAACATTGGCGCATACAAAAATATTACTTTG                         GTTTTAGGTCCAAACATGCTGAAATGGTTATGTCCCACGGCAGTAAG
genomic: AAAGCTATCGGCATCCATTCAACATTGGCGCATACAAAAATATTACTTTGgtctctccct ... tcttgaccagGTTTTAGGTCCAAACATGCTGAAATGGTTATGTCCCACGGCAGTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgtactgatagtgtttcttacctaaggatatgttcgtctgtctcttgaccagGTTTTAGGTCCAAACATGCTGAAATGGTTATGTCCCACGGCAGTAAGCCATCTCAAGGACGGGGTTAGCTTCCCCACATTACGTGATAATTCTTAAACCT
                 ttcttac  putative branch site (score: 2)
                                   ttcgtctgtctctt  putative PPT
                tttctta  TA-rich tract