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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagacaacaattttatgcattctcctttctaggttaatcattattcttaaaagtaattttgccatcttgtgtaactctttagAGAATCATGTCATTGTTGGGGAGCTTTTGGAAGCAAAAGCAAGTCAGCATGCTGACATAAACACGCCAAAATCATTGCCAGTAGATGTAAATTGGAACCC

Basic information

species Glycine max
transcript GLYMA10G35190.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254348736|gb|GR852415.1|GR852415
EST:     TGCTAAGGAGCTTCTTGATTCAATTTTGGATGCTGTTGTTCGAATATTTG                         AGAATCATGTCATTGTTGGGGAGCTTTTGGAAGCAAAAGCAAGTCAGCATG
genomic: TGCTAAGGAGCTTCTTGATTCAATTTTGGATGCTGTTGTTCGAATATTTGgtgagacaac ... aactctttagAGAATCATGTCATTGTTGGGGAGCTTTTGGAAGCAAAAGCAAGTCAGCATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctaggttaatcattattcttaaaagtaattttgccatcttgtgtaactctttagAGAATCATGTCATTGTTGGGGAGCTTTTGGAAGCAAAAGCAAGTCAGCATGCTGACATAAACACGCCAAAATCATTGCCAGTAGATGTAAATTGGAACCC
                                         gtgtaac  putative branch site (score: 3)
                                               ctcttt  CT-rich tract
      ttaatcattattctta  TA-rich tract