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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcctaatcagtttctttaataagattcactttcagtatttgagacaaatatgaaatacctcatatttaatctagctagtgaaccattgtgtttctttacaactacttagATATTTTGGAGTTGATATTAATGCCATACGAGAATATGCCAAGACATGCAATGACATTCAACACTTGCGTGCTGAGATAAG

Basic information

species Glycine max
transcript GLYMA10G34370.1
intron # 6
splice site 3'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34370.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv00s0250g00020.t01 (Vitis vinifera), 3'ss of exon 6
--------------------------gtatcctaatcagtttctttaataagattcactttcagt-atttgagacaa-atatgaaatacctca--tatttaatctagctagtgaaccattgtgtttctttacaactactt--agATATTTTGGAGTTGATATTAATGCCATACGAGAATATGCCAAGACATGCAATGACATTCAACACTTGCGTGCTGAGATAAG
                          || || |    | | ||| | |||   ||  ||||   | | |||||  || | |   | |  |  |  | | | |   ||  |||  ||  ||   || ||| ||   ||  |  |||||||||||||||||||| |||||||||  |||||||||||| ||||   ||||||||||||||||||| ||||| |||||
gtatcctaaacaattttattgttagagtttcatttggactatctattatatatttagcttttgatcacttgagttaagacaactactgacaaaattgtctgagtgaggaagtacactgtta-attccttgacttgtatgtccagATATTTTGGAGTTGATATCAATGCCATAATAGAATATGCCAATACATTTGATGACATTCAACACTTGCGAGCTGAAATAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120532166|gb|EH260299.1|EH260299
EST:     AGAATTGGAGTGAAAACTATATTTTGCTTACAACAAGATTCAGACCTTGA                         ATATTTTGGAGTTGATATTAATGCCATACGAGAATATGCCAAGACATGCAA
genomic: AGAATTGGAGTGAAAACTATATTTTGCTTACAACAAGATTCAGACCTTGAgtatcctaat ... aactacttagATATTTTGGAGTTGATATTAATGCCATACGAGAATATGCCAAGACATGCAA
EST: gi|17022153|gb|BM093187.1|BM093187
EST:     AGAATTGGAGTGAAAACTATATTTTGCTTACAACAAGATTCAGACCTTGA                         ATATTTTGGAGTTGATATTAATGCCATACGAGAATATGCCAAGACATGCAA
genomic: AGAATTGGAGTGAAAACTATATTTTGCTTACAACAAGATTCAGACCTTGAgtatcctaat ... aactacttagATATTTTGGAGTTGATATTAATGCCATACGAGAATATGCCAAGACATGCAA
EST: gi|193463792|gb|FK427016.1|FK427016
EST:     AGAATTGGAGTGAAAACTATATTTTGCTTACAACAAGATCCAGACCTTGA                         ATATTTCGGAGTTGATATTAATGCCATACGAGAATATGCCAAGACATGCAA
genomic: AGAATTGGAGTGAAAACTATATTTTGCTTACAACAAGATTCAGACCTTGAgtatcctaat ... aactacttagATATTTTGGAGTTGATATTAATGCCATACGAGAATATGCCAAGACATGCAA
EST: gi|9564018|gb|BE473527.1|BE473527
EST:     GCTTACAACAAGATTCAGACCTTGA                         ATATTTTGGAGTTGATATTAATGCCATACGAG-A-ATGCCAAGACATGCAA
genomic: GCTTACAACAAGATTCAGACCTTGAgtatcctaat ... aactacttagATATTTTGGAGTTGATATTAATGCCATACGAGAATATGCCAAGACATGCAA
EST: gi|24205361|gb|BU964614.1|BU964614
EST:     AGAATTGGAGTGAAAACTATATTTTGCTTACAACAAGATTCAGACCTTGA                         ATATTTTGGAGTTGATATTAATGCCATACGAGAATATGCCAAGACATGCAA
genomic: AGAATTGGAGTGAAAACTATATTTTGCTTACAACAAGATTCAGACCTTGAgtatcctaat ... aactacttagATATTTTGGAGTTGATATTAATGCCATACGAGAATATGCCAAGACATGCAA
EST: gi|209709966|gb|BW681009.1|BW681009
EST:     AGAATTGGAGTGAAAACTATATTTTGCTTACAACAAGATTCAGACCTTGA                         ATATTTTGGAGTTGATATTAATGCCATACGAGAATATGCCAAGACATGCAA
genomic: AGAATTGGAGTGAAAACTATATTTTGCTTACAACAAGATTCAGACCTTGAgtatcctaat ... aactacttagATATTTTGGAGTTGATATTAATGCCATACGAGAATATGCCAAGACATGCAA
EST: gi|6916528|gb|AW398058.1|AW398058
EST:     AGAATTGGAGTGAAAACTATATTTTGCTTACAACAAGATCCAGACCTTGA                         ATATTTCGGAGTTGATATTAATGCCATACGAGAATATGCCAAGACATGCAA
genomic: AGAATTGGAGTGAAAACTATATTTTGCTTACAACAAGATTCAGACCTTGAgtatcctaat ... aactacttagATATTTTGGAGTTGATATTAATGCCATACGAGAATATGCCAAGACATGCAA
EST: gi|7589574|gb|AW705345.1|AW705345
EST:     AGAATTGGAGTGAAAACTATATTTTGCTTACAACAAGATTCAGACCTTGA                         ATATTTTGGAGTTGATATTAATGCCATACGAGAATATGCCAAGACATGCAA
genomic: AGAATTGGAGTGAAAACTATATTTTGCTTACAACAAGATTCAGACCTTGAgtatcctaat ... aactacttagATATTTTGGAGTTGATATTAATGCCATACGAGAATATGCCAAGACATGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atacctcatatttaatctagctagtgaaccattgtgtttctttacaactacttagATATTTTGGAGTTGATATTAATGCCATACGAGAATATGCCAAGACATGCAATGACATTCAACACTTGCGTGCTGAGATAAG
 tttctttac  putative branch site 
     tcatatttaatcta  TA-rich tract