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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgctgtgcctaacggtattccttggtatattgtgattactcatacaataaactaagttgaatgacttctgccttttcagGCTAGTGGGGCAAGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAG

Basic information

species Glycine max
transcript GLYMA10G34220.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34220.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv13s0019g05360.t01 (Vitis vinifera), 3'ss of exon 8
gtttgctgtgcctaacggtattccttggtatattgtgattac-tcatacaataaactaagttga-atgacttct--gccttttcagGCTAGTGGGGCAAGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAG
       ||    ||  | |||||    | |  ||  || |  | | |  |  |||||| |||| || |  |||  || ||||||||| |||||||| || ||||||||||| ||||| ||||||| | | || || ||||| |||||
-------gtaaacaaatg-attccc--atttgctggcatcatgttacatga-gaactaaattgagataaactctacgctttttcagGCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGGACAACTGATAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22927860|gb|BU544999.1|BU544999
EST:     TAGGATTGGTTGTTGGTCGTGGTGGAAGGAATATTATGGAAATTAGTCAG                         GCTAGTGGGGCAAGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGA
genomic: TAGGATTGGTTGTTGGTCGTGGTGGAAGGAATATTATGGAAATTAGTCAGgtttgctgtg ... gccttttcagGCTAGTGGGGCAAGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGA
EST: gi|193520218|gb|FK474667.1|FK474667
EST:     TAGGATTGGTTGTTGGTCGTGGTGGAAGGAATATTATGGAAATTAGTCAG                         GCTAGTGGGGCAAGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGA
genomic: TAGGATTGGTTGTTGGTCGTGGTGGAAGGAATATTATGGAAATTAGTCAGgtttgctgtg ... gccttttcagGCTAGTGGGGCAAGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGA
EST: gi|15202846|gb|BI425623.1|BI425623
EST:     GGAAGGAATATTATGGAAATTAGTCAG                         GCTAGTGGGGCAAGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGA
genomic: GGAAGGAATATTATGGAAATTAGTCAGgtttgctgtg ... gccttttcagGCTAGTGGGGCAAGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGA
EST: gi|6502014|gb|AW203387.1|AW203387
EST:     TAGGATTGGTTGTTGGTCGTGGTGGAAGGAATATTATGGAAATTAGTCAG                         GCTAGTGGGGCAAGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGA
genomic: TAGGATTGGTTGTTGGTCGTGGTGGAAGGAATATTATGGAAATTAGTCAGgtttgctgtg ... gccttttcagGCTAGTGGGGCAAGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGA
EST: gi|192308183|gb|FK001281.1|FK001281
EST:     TAGGATTGGTTGTTGGTCGTGGTGGAAGGAATATTATGGAAATTAGTCAG                         GCTAGTGGGGCAAGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGA
genomic: TAGGATTGGTTGTTGGTCGTGGTGGAAGGAATATTATGGAAATTAGTCAGgtttgctgtg ... gccttttcagGCTAGTGGGGCAAGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGA
EST: gi|192303155|gb|FG997731.1|FG997731
EST:     TAGGATTGGTTGTTGGTCGTGGTGGAAGGAATATTATGGAAATTAGTCAG                         GCTAGTGGGGCAAGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGA
genomic: TAGGATTGGTTGTTGGTCGTGGTGGAAGGAATATTATGGAAATTAGTCAGgtttgctgtg ... gccttttcagGCTAGTGGGGCAAGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGA
EST: gi|193665257|gb|FK607969.1|FK607969
EST:     GGTGGAAGGAATATTATGGAAATTAGTCAG                         GCTAGTGGGGCAAGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGA
genomic: GGTGGAAGGAATATTATGGAAATTAGTCAGgtttgctgtg ... gccttttcagGCTAGTGGGGCAAGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGA
EST: gi|208300205|gb|GE098892.1|GE098892
EST:     TAGGATTGGTTGTTGGTCGTGGTGGAAGGAATATTATGGAAATTAGTCAG                         GCTAGTGGGGCAAGG
genomic: TAGGATTGGTTGTTGGTCGTGGTGGAAGGAATATTATGGAAATTAGTCAGgtttgctgtg ... gccttttcagGCTAGTGGGGCAAGG
EST: gi|24205232|gb|BU964485.1|BU964485
EST:     TAGGATTGGTTGTTGGTCGTGGTGGAAGGAATATTATGGAAATTAGTCAG                         GCTAGTGGGGCAAGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGA
genomic: TAGGATTGGTTGTTGGTCGTGGTGGAAGGAATATTATGGAAATTAGTCAGgtttgctgtg ... gccttttcagGCTAGTGGGGCAAGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatattgtgattactcatacaataaactaagttgaatgacttctgccttttcagGCTAGTGGGGCAAGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAG
                                        cttctgccttttc  CT-rich tract
                 atacaataaactaa  TA-rich tract