1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gcaaatatttcgtctgtgtttcaaaaagtaaatatttcttctattctttaaataaacagtgtacgaaataataattcctccaatcctatatgactaatagGTGGGAGAAAAAACCAATTTCAAATAGAGAAACGGTGAAGCTGCCACTGCTTGGTAGAATAGCAGAAATGACTCGCAGGGGATCAATGCTGGCAACACAT
species | Glycine max |
transcript | GLYMA10G34010.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTTATCAAGTTGTATATTGAGGAGGGTAAAGTTGTTCGCCATGAGGACTG GTGGGAGAAAAAACCAATTTCAAATAGAGAAACGGTGAAGCTGCCACTGCTEST: gi|298191014|gb|HO038493.1|HO038493
genomic: CTTATCAAGTTGTATATTGAGGAGGGTAAAGTTGTTCGCCATGAGGACTGgtatgcatta ... tgactaatagGTGGGAGAAAAAACCAATTTCAAATAGAGAAACGGTGAAGCTGCCACTGCT
EST: CTTATCAAGTTGTATATTGAGGAGGGTAAAGTTGTTCGCCATGAGGACTG GTGGGAGAAAAAACCAATTTCAAATAGAGAAACGGTGAAGCTGCCACTGCTEST: gi|15288312|gb|BI472203.1|BI472203
genomic: CTTATCAAGTTGTATATTGAGGAGGGTAAAGTTGTTCGCCATGAGGACTGgtatgcatta ... tgactaatagGTGGGAGAAAAAACCAATTTCAAATAGAGAAACGGTGAAGCTGCCACTGCT
EST: CTTATCAAGTTGTATATTGAGGAGGGTAAAGTTGTTCGCCATGAGGACTG GTGGGAGAAAAA-CCAATTTCAAATAGAGAAACGGTGAAGCTGCCACTGCTEST: gi|298180389|gb|HO025590.1|HO025590
genomic: CTTATCAAGTTGTATATTGAGGAGGGTAAAGTTGTTCGCCATGAGGACTGgtatgcatta ... tgactaatagGTGGGAGAAAAAACCAATTTCAAATAGAGAAACGGTGAAGCTGCCACTGCT
EST: CTTATCAAGTTGTATATTGAGGAGGGTAAAGTTGTTCGCCATGGGGACTG GTGGGAGAAAAAACCAATTTCAAATAGAGAAACGGTGAAGCTGCCACTGCTEST: gi|58018996|gb|CX705738.1|CX705738
genomic: CTTATCAAGTTGTATATTGAGGAGGGTAAAGTTGTTCGCCATGAGGACTGgtatgcatta ... tgactaatagGTGGGAGAAAAAACCAATTTCAAATAGAGAAACGGTGAAGCTGCCACTGCT
EST: CTTATCAAGTTGTATATTGAGGAGGGTAAAGTTGTTCGCCATGAGGACTG GTGGGAGAAAAAACCAATTTCAAATAGAGAAACGGTGAAGCTGCCACTGCTEST: gi|51337031|gb|CO980897.1|CO980897
genomic: CTTATCAAGTTGTATATTGAGGAGGGTAAAGTTGTTCGCCATGAGGACTGgtatgcatta ... tgactaatagGTGGGAGAAAAAACCAATTTCAAATAGAGAAACGGTGAAGCTGCCACTGCT
EST: CTTATCAAGTTGTATATTGAGGAGGGTAAAGTTGTTCGCCATGAGGACTG GTGGGAGAAAAAACCAATTTCAAATAGAGAAACGGTGAAGCTGCCACTGCTEST: gi|298180981|gb|HO022420.1|HO022420
genomic: CTTATCAAGTTGTATATTGAGGAGGGTAAAGTTGTTCGCCATGAGGACTGgtatgcatta ... tgactaatagGTGGGAGAAAAAACCAATTTCAAATAGAGAAACGGTGAAGCTGCCACTGCT
EST: CTTATCAAGTTGTATATTGAGGAGGGTAAAGTTGTTCGCCATGAGGACTG GTGGGAGAAAAAACCAATTTCAAATAGAGAAACGGTGAAGCTGCCACTGCTEST: gi|151402430|gb|EV272243.1|EV272243
genomic: CTTATCAAGTTGTATATTGAGGAGGGTAAAGTTGTTCGCCATGAGGACTGgtatgcatta ... tgactaatagGTGGGAGAAAAAACCAATTTCAAATAGAGAAACGGTGAAGCTGCCACTGCT
EST: CTTATCAAGTTGTATATTGAGGAGGGTAAAGTTGTTCGCCATGAGGACTG GTGGGAGAAAAAACCAATTTCAAATAGAGAAACGGTGAAGCTGCCACTGCT
genomic: CTTATCAAGTTGTATATTGAGGAGGGTAAAGTTGTTCGCCATGAGGACTGgtatgcatta ... tgactaatagGTGGGAGAAAAAACCAATTTCAAATAGAGAAACGGTGAAGCTGCCACTGCT
ctttaaataaacagtgtacgaaataataattcctccaatcctatatgactaatagGTGGGAGAAAAAACCAATTTCAAATAGAGAAACGGTGAAGCTGCCACTGCTTGGTAGAATAGCAGAAATGACTCGCAGGGGATCAATGCTGGCAACACAT
tacgaaataataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaaatatttcgtctgtgtttcaaaaagtaaatatttcttctattctttaaataaacagtgtacgaaataataattcctccaatcctatatgactaatagGTGGGAGAAAAAACCAATTTCAAATAGAGAAACGGTGAAGCTGCCACTGCTTGGTAGAATAGCAGAAATGACTCGCAGGGGATCAATGCTGGCAACACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - -gtctgtg
- - - - - - - - - - - -aaaagtaa
- - - - - - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcctcc