1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...tcatcctcgttgcctcctccaaaggggtccgtggtttgaattatgccgtgcatttatcaatatgaatatgctagggcctaacttttataaactgtttcagGATGGTAAGACATTGTACAATGAGTTGGAAGTTGTGGAAGGAATGAAGCTCGACAGGGGATACATTTCTCCATATTTCATAACAAACCAGAAGAACCAGA
species | Glycine max |
transcript | GLYMA10G33680.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGGAGAAAGTTGGCAAAGAGGGTGTCATCACGGTCTCA GATGGTAAGACATTGTACAATGAGTTGGAAGTTGTGGAAGGAATGAAGCTCEST: gi|207787053|gb|GD755890.1|GD755890
genomic: TGGAGAAAGTTGGCAAAGAGGGTGTCATCACGATCTCAgtaagttatt ... actgtttcagGATGGTAAGACATTGTACAATGAGTTGGAAGTTGTGGAAGGAATGAAGCTC
EST: TTGCAAAAGCTATGGAGAAAGTTGGCAAAGAGGGTGTCATCACGATCTCA GATGGTAAGACATTGTACAATGAGTTGGAAGTTGTGGAAGGAATGAAGCTCEST: gi|18041129|gb|BM309423.1|BM309423
genomic: TTGCAAAAGCTATGGAGAAAGTTGGCAAAGAGGGTGTCATCACGATCTCAgtaagttatt ... actgtttcagGATGGTAAGACATTGTACAATGAGTTGGAAGTTGTGGAAGGAATGAAGCTC
EST: TTGCAAAAGCTATGGAGAAAGTTGGCAAAGAGGGTGTCATCACGATCTCA GATGGTAAGACATTGTACAATGAGTTGGAAGTTGTGGAAGGAATGAAGCTCEST: gi|16277716|gb|BI942526.1|BI942526
genomic: TTGCAAAAGCTATGGAGAAAGTTGGCAAAGAGGGTGTCATCACGATCTCAgtaagttatt ... actgtttcagGATGGTAAGACATTGTACAATGAGTTGGAAGTTGTGGAAGGAATGAAGCTC
EST: GGCAAAGAGGGTGTCATCACGATCTCA GATGGTAAGACATTGTACAATGAGTTGGAAGTTGTGGAAGGAATGAAGCTCEST: gi|207785383|gb|GD756908.1|GD756908
genomic: GGCAAAGAGGGTGTCATCACGATCTCAgtaagttatt ... actgtttcagGATGGTAAGACATTGTACAATGAGTTGGAAGTTGTGGAAGGAATGAAGCTC
EST: TTGCAAAAGCTATGGAGAAAGTTGGCAAAGAGGGTGTCATCACGATCTCA GATGGTAAGACATTGTACAATGAGTTGGAAGTTGTGGAAGGAATGAAGCTCEST: gi|193414275|gb|FK377919.1|FK377919
genomic: TTGCAAAAGCTATGGAGAAAGTTGGCAAAGAGGGTGTCATCACGATCTCAgtaagttatt ... actgtttcagGATGGTAAGACATTGTACAATGAGTTGGAAGTTGTGGAAGGAATGAAGCTC
EST: AAAGTAGGCAAAGAGGGTTGTCATCACGATCTCA GATGGTAAGACATTGTACAATGAGTTGGAAGTTGTGGAAGGAATGAAGCTC
genomic: AAAGTTGGCAAAGAGGG-TGTCATCACGATCTCAgtaagttatt ... actgtttcagGATGGTAAGACATTGTACAATGAGTTGGAAGTTGTGGAAGGAATGAAGCTC
ccgtgcatttatcaatatgaatatgctagggcctaacttttataaactgtttcagGATGGTAAGACATTGTACAATGAGTTGGAAGTTGTGGAAGGAATGAAGCTCGACAGGGGATACATTTCTCCATATTTCATAACAAACCAGAAGAACCAGA
gcctaac putative branch site (score: 2)
ctgtttc putative PPT
atttatcaatatgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatcctcgttgcctcctccaaaggggtccgtggtttgaattatgccgtgcatttatcaatatgaatatgctagggcctaacttttataaactgtttcagGATGGTAAGACATTGTACAATGAGTTGGAAGTTGTGGAAGGAATGAAGCTCGACAGGGGATACATTTCTCCATATTTCATAACAAACCAGAAGAACCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
-catcctc
- - - - - - -ctcctcc
- - - - - - - - - - - - - - - -tggtttg
- - - - - - - - - - - - - - - - - - - - ttatgcc
- - - - - - - - - - - - - - - - - - - - - - - - tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgcta