1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tcatcattcatggcaattaagttcttgcttaagtctttatacatcaatcaagttattctgaactaaatactaacattatcattgaaaactcattttgtagCTTGCTAACATCATGGGTCGCTCTCAGTGGCTAACGTGTCCAAGGAAG
species | Glycine max |
transcript | GLYMA10G32660.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGGAGGGTTTTATAGGGGCATCTGTTACCACCATCATCTCTGCATTTATG CTTGCTAACATCATGGGTCGCTCTCAGTGGCTAACGTGTCCAAGGAAGEST: gi|58016663|gb|CX703405.1|CX703405
genomic: GGGAGGGTTTTATAGGGGCATCTGTTACCACCATCATCTCTGCATTTATGgtgagcagaa ... cattttgtagCTTGCTAACATCATGGGTCGCTCTCAGTGGCTAACGTGTCCAAGGAAG
EST: CCACCATCATCTCTGCATTTATG C-TGCTANNCATCATGGGTCGCTCTCAGTGGCTANCGTGTCCAAGGAAGEST: gi|13480063|gb|BG509406.1|BG509406
genomic: CCACCATCATCTCTGCATTTATGgtgagcagaa ... cattttgtagCTTGCTA-ACATCATGGGTCGCTCTCAGTGGCTAACGTGTCCAAGGAAG
EST: GGGAGGGTTTTATAGGGGCATCTGTTACCACCATCATCTCTGCATTTATG CTTGCTAACATCATGGGTCGCTCTCAGTGGCTAACGTGTCCAAGGA--EST: gi|22524723|gb|BU083534.1|BU083534
genomic: GGGAGGGTTTTATAGGGGCATCTGTTACCACCATCATCTCTGCATTTATGgtgagcagaa ... cattttgtagCTTGCTAACATCATGGGTCGCTCTCAGTGGCTAACGTGTCCAAGGAAG
EST: GGGAGGGTTTTATAGGGGCATCTGTTACCACCATCATCTCTGCATTTATG CTTGCTAACATCATGGGTCGCTCTCAGTGGCTAACGTGTCCAAGGAAGEST: gi|31561270|gb|CD487108.1|CD487108
genomic: GGGAGGGTTTTATAGGGGCATCTGTTACCACCATCATCTCTGCATTTATGgtgagcagaa ... cattttgtagCTTGCTAACATCATGGGTCGCTCTCAGTGGCTAACGTGTCCAAGGAAG
EST: GGGAGGGTTTTATAGGGGCATCTGTTACCACCATCATCTCTGCATTTATG CTTGCTAACATCATGGGTCGCTCTCAGTGGCTAACGTGTCCAAGGAAGEST: gi|10709049|gb|BF008710.1|BF008710
genomic: GGGAGGGTTTTATAGGGGCATCTGTTACCACCATCATCTCTGCATTTATGgtgagcagaa ... cattttgtagCTTGCTAACATCATGGGTCGCTCTCAGTGGCTAACGTGTCCAAGGAAG
EST: TACCACCATCATCTCTGCATTTATG CTTGCTAACATCATGGGTCGCTCTCAGTGGCTAACGTGTCCAAGGAAGEST: gi|17153399|gb|BM143332.1|BM143332
genomic: TACCACCATCATCTCTGCATTTATGgtgagcagaa ... cattttgtagCTTGCTAACATCATGGGTCGCTCTCAGTGGCTAACGTGTCCAAGGAAG
EST: GGGAGGGTTTTATAGGGGCATCTGTTACCACCATCATCTCTGCATTTATG CTTGCTAACATCATGGGTCGCTCTCAGTGGCTA
genomic: GGGAGGGTTTTATAGGGGCATCTGTTACCACCATCATCTCTGCATTTATGgtgagcagaa ... cattttgtagCTTGCTAACATCATGGGTCGCTCTCAGTGGCTA
aatcaagttattctgaactaaatactaacattatcattgaaaactcattttgtagCTTGCTAACATCATGGGTCGCTCTCAGTGGCTAACGTGTCCAAGGAAG
tactaac putative branch site (score: 0)
ctcatttt putative PPT
taaatactaacattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatcattcatggcaattaagttcttgcttaagtctttatacatcaatcaagttattctgaactaaatactaacattatcattgaaaactcattttgtagCTTGCTAACATCATGGGTCGCTCTCAGTGGCTAACGTGTCCAAGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA