1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gcattcaattaataacacctagcagttccatgaaaaagatattattttattatagttttaaaagattgtaggaacttaaaggcttactattttggcacagGCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATGATCAGAAGTCTCTTGATGAATGGCTCTTGCATTCTTACTCTCATGTTGA
species | Glycine max |
transcript | GLYMA10G32590.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG GCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATGEST: gi|151409417|gb|EV279225.1|EV279225
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
EST: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG GCTCGTTGTGGTTTGGATGATATGAAAGGCGTCATGAAGTCACGGATTCATEST: gi|193323051|gb|FK292073.1|FK292073
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAA-GGCGTCATGAAGTCACGGATTCAT
EST: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG GCTCGCTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATGEST: gi|209707562|gb|BW680932.1|BW680932
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
EST: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG GCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATGEST: gi|208110334|gb|GD911790.1|GD911790
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
EST: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG GCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATGEST: gi|208204189|gb|GE006994.1|GE006994
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
EST: TTCTCCTATCTTTGTAAGAGAATCACAAGTTTCTG GCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATGEST: gi|192324104|gb|FK019395.1|FK019395
genomic: TTCTCCTATCTTTG-AAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
EST: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG GCTCGTTGTGGTTTGGATGATATEST: gi|192295514|gb|FG988088.1|FG988088
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATAT
EST: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG GCTCGTTGTGGTTTGGATGATATGAAAGCGCCATGAAGTCACGGATTCATGEST: gi|151411234|gb|EV281045.1|EV281045
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
EST: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG GCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATGEST: gi|10231207|gb|BE800023.1|BE800023
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
EST: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG GCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATGEST: gi|12773166|gb|BG238093.1|BG238093
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
EST: AATTTTGTACTGACTNTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG GCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATGEST: gi|254340633|gb|GR854361.1|GR854361
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
EST: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG GCTCGTTGTGGTTTGGATGATATGAAAGGCGTCATGAAGTCACGGATTCATEST: gi|151412396|gb|EV282208.1|EV282208
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAA-GGCGTCATGAAGTCACGGATTCAT
EST: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG GCTCGTTGTGGTTTGGATGATATGAAAGCGTCATGAAGTCACGGATTCATGEST: gi|254340634|gb|GR854362.1|GR854362
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
EST: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG GCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATGEST: gi|58025262|gb|CX712003.1|CX712003
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
EST: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG GCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATGEST: gi|20813924|gb|BQ298402.1|BQ298402
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
EST: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG GCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATGEST: gi|192326692|gb|FK018879.1|FK018879
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
EST: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTG GCTCGTTGTGGTTTGGATGATATGAAAGCGTCATGAAGTCACGGATTCATG
genomic: AATTTTGTACTGACTTTTCTCCTATCTTTGAAGAGAATCACAAGTTTCTGgtaagatatc ... tttggcacagGCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATG
tttattatagttttaaaagattgtaggaacttaaaggcttactattttggcacagGCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATGATCAGAAGTCTCTTGATGAATGGCTCTTGCATTCTTACTCTCATGTTGA
ggcttac putative branch site (score: 3)
ctatttt CT-rich tract
tatagttttaaaagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcattcaattaataacacctagcagttccatgaaaaagatattattttattatagttttaaaagattgtaggaacttaaaggcttactattttggcacagGCTCGTTGTGGTTTGGATGATATGAAGGCGTCATGAAGTCACGGATTCATGATCAGAAGTCTCTTGATGAATGGCTCTTGCATTCTTACTCTCATGTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT