1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaatcagaagttacaattgatcctcttgttaatgactaaaattattttttccactgttatcatagaaattcatataaaccaatttttggcttaaattttgtcatgtgcagGAACTATGGCAAAGGAGAGTTGAGAAGTACTGGGATCTCTTGAGTCCAAAAATCACATCAAACACATTGAGGAATATTATGGATATGAAAGCAAACATGG
species | Glycine max |
transcript | GLYMA10G32470.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTAGATTAGCTGACTTTGGCTATTCAAATGACATGTTTGAAAAGGACACG GAACTATGGCAAAGGAGAGTTGAGEST: gi|8827658|gb|BE211388.1|BE211388
genomic: CTAGATTAGCTGACTTTGGCTATTCAAATGACATGTTTGAAAAGGACACGgtaatcagaa ... tcatgtgcagGAACTATGGCAAAGGAGAGTTGAG
EST: TAGATTAGCTGACTTTGGCTATTCAAATGACATGTTTGTAAAAGGACACG GAACTATGGCAAAGGAGAGTTGAGAAGTACTGGGATCEST: gi|151399856|gb|EV269727.1|EV269727
genomic: TAGATTAGCTGACTTTGGCTATTCAAATGACATGTTTG-AAAAGGACACGgtaatcagaa ... tcatgtgcagGAACTATGGCAAAGGAGAGTTGAGAAGTACTGGGATC
EST: CTAGATTAGCTGACTTTGGCTATTCAAATGACATGTTTGAAAAGGACACG GAACTATGGCAAAGGAGAGTTGAGAAGTACTGGGACCTCTTGAGTCCAAAA
genomic: CTAGATTAGCTGACTTTGGCTATTCAAATGACATGTTTGAAAAGGACACGgtaatcagaa ... tcatgtgcagGAACTATGGCAAAGGAGAGTTGAGAAGTACTGGGATCTCTTGAGTCCAAAA
gttatcatagaaattcatataaaccaatttttggcttaaattttgtcatgtgcagGAACTATGGCAAAGGAGAGTTGAGAAGTACTGGGATCTCTTGAGTCCAAAAATCACATCAAACACATTGAGGAATATTATGGATATGAAAGCAAACATGG
ttttgtc CT-rich tract
aaattcatataaacca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcagaagttacaattgatcctcttgttaatgactaaaattattttttccactgttatcatagaaattcatataaaccaatttttggcttaaattttgtcatgtgcagGAACTATGGCAAAGGAGAGTTGAGAAGTACTGGGATCTCTTGAGTCCAAAAATCACATCAAACACATTGAGGAATATTATGGATATGAAAGCAAACATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA