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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgattttgttgtggactttgtaatccagttttttattcacctctttcacattgtttgtaagcattgttgtgtaaccaaataacatactttttgttcctccacagCAAACAACACGTGTTGAGCGTTTTATTGGTTTTCTTCTTGCAATATGGGGTATATTGTTTTACACTCGACTTCTAAGTACGATGACCGAACAATTTAGG

Basic information

species Glycine max
transcript GLYMA10G32300.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G32300.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G172410_T01 (Zea mays), 3'ss of exon 5
-----------------------------------gtatg--ttgatt-ttgttgtggactttgtaatccagttttttattcacctctttcacattgtttgtaagcattgttgtgtaaccaaataacatactttttgttcctccacagCAAACAACACGTGTTGAGCGTTTTATTGGTTTTCTTCTTGCAATATGGGGTATATTGTTTTACACTCGACTTCTAAGTACGATGACCGAACAATTTAGG
                                   ||| |  || ||   || | ||   ||    | | | |||  ||| |   ||||| |  |  |||      |   |  | |    | ||  | |  |  ||| ||    ||||||||  ||||||||||||||| | ||||| ||  ||||||| || ||||||||||| || ||  ||||| |  ||||| | ||||| ||||||||||| 
gtaagtagggactagggggagtactgacagtttctgtaaggcttaataactgatatgtttttccccagctattttcctatccgtttctttaaattcttttcctttaacaatcattttctaatatgtcgttttgcttgctcga--acagCAAAAGACACGTGTTGAGCGTGTCATTGGGTTCTTTCTTGCTATCTGGGGTATATTATTCTATTCTCGATTATTAAGTGCAATGACAGAACAATTTAGA

upper sequence: GLYMA10G32300.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv05s0020g04630.t01 (Vitis vinifera), 3'ss of exon 6
gtatgttgattttgttgtggactttgtaatccagttttttattcacctctttcacattgtttgtaagcattgttgtgtaaccaaataacatactttttgttcctccacagCAAACAACACGTGTTGAGCGTTTTATTGGTTTTCTTCTTGCAATATGGGGTATATTGTTTTACACTCGACTTCTAAGTACGATGACCGAACAATTTAGG
                                             |     | | | ||  | |    | |||| ||     |||||  ||| | | ||   ||   ||||||| ||||| | |||  ||| ||||||| ||| ||||||| |||||||| |||||||||||| | || ||  | ||||| ||||| |||||||| || 
-------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctaaagtaatagtgaat-tgtttactgttttgattgaaaatattatattgtgtggaact--gcagCAAAGAACACATATTGGACGTGTTATTGGCTTTGTTCTTGCTATATGGGGCATATTGTTTTACTCCCGCCTATTGAGTACAATGACAGAACAATTCAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtttgtaagcattgttgtgtaaccaaataacatactttttgttcctccacagCAAACAACACGTGTTGAGCGTTTTATTGGTTTTCTTCTTGCAATATGGGGTATATTGTTTTACACTCGACTTCTAAGTACGATGACCGAACAATTTAGG
                           aaataac  putative branch site (score: 2)
                                   tactttttgttcctcc  CT-rich tract
                           aaataacatacttttt  TA-rich tract