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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgccccttttctttccatcttgtctatcaatggtttcaccctgatccattttcttatttcttgctttgacttggaaatgagtacctcttttgggagacaaatggcgcatatattgatctcattctgtttcagGAAGCTAATAAACCCCCTGATAGTTGGTTTGAATTAAAGATCAATACACATGTTTATGTCACTGGGTTGCCTGAGGACGTTACCACTGATGAA

Basic information

species Glycine max
transcript GLYMA10G31450.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G31450.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv00s0499g00010.t01 (Vitis vinifera), 3'ss of exon 5
gtgccccttttctttccatcttgtctatcaatggtttcaccctgatccattttcttatttcttgctttgacttggaa--atgagtacctcttttgggagacaaatggc-gcatatattgatctcattctgtttcagGAAGCTAATAAACCCCCTGATAGTTGGTTTGAATTAAAGATCAATACACATGTTTATGTCACTGGGTTGCCTGAGGACGTTACCACTGATGAA
                                  |||        || |  ||   | || | | | |   | ||||  || | || |  ||| |  |   |  |       | | |   | | | ||  || ||||||||||| ||||| |||||||||||||| || |||||  | ||||||||||||||||| || |||||||| || || |||||   ||| || 
---------------------------------atttgggt---gtctaagttgaaagttttagttatacttaggaattataactagccatttggctatttatgtttttatttttctcactttgactcatttacagGAAGCTAACAAACCTCCTGATAGTTGGTTCGATTTAAAAGTTAATACACATGTTTATGTGACCGGGTTGCCAGATGATGTTACTGTTGACGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207756657|gb|GD729083.1|GD729083
EST:     TGGTATCAGGTGAAAAAAGGAAGCTTTCAGATCAACAAACTGACAAGAAG                         GAAGCTAATAAACCCCCTGATAGTTGGTTTGAA
genomic: TGGTATCAGGTGAAAAAAGGAAGCTTTCAGATCAACAAACTGACAAGAAGgtgccccttt ... tctgtttcagGAAGCTAATAAACCCCCTGATAGTTGGTTTGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagtacctcttttgggagacaaatggcgcatatattgatctcattctgtttcagGAAGCTAATAAACCCCCTGATAGTTGGTTTGAATTAAAGATCAATACACATGTTTATGTCACTGGGTTGCCTGAGGACGTTACCACTGATGAA
                                 tattgat  putative branch site (score: 3)
                                       tctcattctgtttc  CT-rich tract
                              atatattgat  TA-rich tract