1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaatgtcacacagttttagatgattccataaggagtcctagtctgtttgaggaattataattttttaaaactcacaaacctttttcttttaaacttgcttttctactataacttttgccttcatttcagATGGATTAAAAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATG
species | Glycine max |
transcript | GLYMA10G30880.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAATGTTGGGAAGCTGGAAAGTGATCACAAGAAAGCTAGACTTTTGGCTG ATGGATTAAAAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGAEST: gi|14990470|gb|BI316143.1|BI316143
genomic: AAATGTTGGGAAGCTGGAAAGTGATCACAAGAAAGCTAGACTTTTGGCTGgtaaatgtca ... ttcatttcagATGGATTAAAAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGA
EST: AAATGTTGGGAAGCTGGAAAGTGATCACAAGAAAGCTAGACTTTTGGCTG ATGGATTAAAAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGAEST: gi|207729253|gb|GD709109.1|GD709109
genomic: AAATGTTGGGAAGCTGGAAAGTGATCACAAGAAAGCTAGACTTTTGGCTGgtaaatgtca ... ttcatttcagATGGATTAAAAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGA
EST: AAATGTTGGGAAGCTGGAAAGTGATCACAAGAAAGCTAGACTTTTGGCTG ATGGATTAAAAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGAEST: gi|17401408|gb|BM178190.1|BM178190
genomic: AAATGTTGGGAAGCTGGAAAGTGATCACAAGAAAGCTAGACTTTTGGCTGgtaaatgtca ... ttcatttcagATGGATTAAAAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGA
EST: AAATGTTGGGAAGCTGGAAAGTGATCACAAGAAAGCTAGACTTTTGGCTG ATGGATTAAAAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGAEST: gi|254336691|gb|GR842870.1|GR842870
genomic: AAATGTTGGGAAGCTGGAAAGTGATCACAAGAAAGCTAGACTTTTGGCTGgtaaatgtca ... ttcatttcagATGGATTAAAAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGA
EST: AAATGTTGGGAAGCTGGAAAGTGATCACAAGAAAGCTAGACTTTTGGCTG ATGGATTAAAAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGAEST: gi|22523739|gb|BU082550.1|BU082550
genomic: AAATGTTGGGAAGCTGGAAAGTGATCACAAGAAAGCTAGACTTTTGGCTGgtaaatgtca ... ttcatttcagATGGATTAAAAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGA
EST: AAATGTTGGGAAGCTGGAAAGTGATCACAAGAAAGCTAGACTTTTGGCTG ATGGATTAAAAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGAEST: gi|13482379|gb|BG511722.1|BG511722
genomic: AAATGTTGGGAAGCTGGAAAGTGATCACAAGAAAGCTAGACTTTTGGCTGgtaaatgtca ... ttcatttcagATGGATTAAAAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGA
EST: AAATGTTGGGAAGCTGGAAAGTGATCACAAGAAAGCTAGACTTTTGGCTG ATGGATTAAAAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGAEST: gi|254336692|gb|GR842871.1|GR842871
genomic: AAATGTTGGGAAGCTGGAAAGTGATCACAAGAAAGCTAGACTTTTGGCTGgtaaatgtca ... ttcatttcagATGGATTAAAAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGA
EST: AAATGTTGGGAAGCTGGAAAGTGATCACAAGAAAGCTAGACTTTTGGCTG ATGGATTAAAAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGAEST: gi|14258404|gb|BG881312.1|BG881312
genomic: AAATGTTGGGAAGCTGGAAAGTGATCACAAGAAAGCTAGACTTTTGGCTGgtaaatgtca ... ttcatttcagATGGATTAAAAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGA
EST: AAATGTTGGGAAGCTGGAAAGTGATCACAAGAAAGCTAGACTTTTGGCTG ATGGATTAAAAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGAEST: gi|21993634|gb|BQ785162.1|BQ785162
genomic: AAATGTTGGGAAGCTGGAAAGTGATCACAAGAAAGCTAGACTTTTGGCTGgtaaatgtca ... ttcatttcagATGGATTAAAAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGA
EST: AAATGTTGGGAAGCTGGAAAGTGATCACAAGAAAGCTAGACTTTTGGCTG ATGGATTAAAAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGA
genomic: AAATGTTGGGAAGCTGGAAAGTGATCACAAGAAAGCTAGACTTTTGGCTGgtaaatgtca ... ttcatttcagATGGATTAAAAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGA
caaacctttttcttttaaacttgcttttctactataacttttgccttcatttcagATGGATTAAAAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATG
ctataac putative branch site (score: 3)
cttttgccttcatttc CT-rich tract
tttttcttttaaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatgtcacacagttttagatgattccataaggagtcctagtctgtttgaggaattataattttttaaaactcacaaacctttttcttttaaacttgcttttctactataacttttgccttcatttcagATGGATTAAAAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA