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...accgatacttgctgccctagaatctaagtttactctttcactttatattgattgtgtttgccaatcttgttcttttaaccattatgtgcatttgtaacagATTAGCTTTTCAGATTGGTTTTTATCCAAAGGTGGCACACGCATGAGTATTACAAAAATGTGGGATCCAGTTGCCTATGCCCTTGGGTTTATCGACTGTG
species | Glycine max |
transcript | GLYMA10G30220.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTCTTGTTGATCCAGATGGTGCACTGAGGGACATAAGGAATTTGGATAGT ATTAGCTTTTCAGATTGGTTTTTATCCAAAGGTGGCACACGCATGAGTATTEST: gi|17519083|gb|BM188125.1|BM188125
genomic: CTCTTGTTGATCCAGATGGTGCACTGAGGGACATAAGGAATTTGGATAGTgtaagaggat ... tttgtaacagATTAGCTTTTCAGATTGGTTTTTATCCAAAGGTGGCACACGCATGAGTATT
EST: GACATAAGGAATTTGGATAGT ATTAGCTTTTCAGATTGGTTTTTATCCAAAGGTGGCACACGCATGAGTATTEST: gi|208089792|gb|GD889167.1|GD889167
genomic: GACATAAGGAATTTGGATAGTgtaagaggat ... tttgtaacagATTAGCTTTTCAGATTGGTTTTTATCCAAAGGTGGCACACGCATGAGTATT
EST: CTCTTGTTGATCCAGATGGTGCACTGAGGGACATAAGGAATTTGGATAGT ATTAGCTTTTCAGACTGGTTTTTATCCAAAGGTGGCACACGCATGAGTATTEST: gi|208324877|gb|GE123151.1|GE123151
genomic: CTCTTGTTGATCCAGATGGTGCACTGAGGGACATAAGGAATTTGGATAGTgtaagaggat ... tttgtaacagATTAGCTTTTCAGATTGGTTTTTATCCAAAGGTGGCACACGCATGAGTATT
EST: CTCTTGTTGATCCAGATGGTGCACTGAGGGACATAAGGAATTTGGATAGT ATTAGCTTTTCAGATTGGTTTTTATCCAAAGGTGGCACACGCATGAGTATT
genomic: CTCTTGTTGATCCAGATGGTGCACTGAGGGACATAAGGAATTTGGATAGTgtaagaggat ... tttgtaacagATTAGCTTTTCAGATTGGTTTTTATCCAAAGGTGGCACACGCATGAGTATT
tattgattgtgtttgccaatcttgttcttttaaccattatgtgcatttgtaacagATTAGCTTTTCAGATTGGTTTTTATCCAAAGGTGGCACACGCATGAGTATTACAAAAATGTGGGATCCAGTTGCCTATGCCCTTGGGTTTATCGACTGTG
ttttaac putative branch site (score: 2)
ttcttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accgatacttgctgccctagaatctaagtttactctttcactttatattgattgtgtttgccaatcttgttcttttaaccattatgtgcatttgtaacagATTAGCTTTTCAGATTGGTTTTTATCCAAAGGTGGCACACGCATGAGTATTACAAAAATGTGGGATCCAGTTGCCTATGCCCTTGGGTTTATCGACTGTG
- - - - ttgctgc
- - - - - - - - - - - - - - - - - ctttcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgtgc