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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgaagcaatatatttttaaaattcttccttcaactaaggtatcactgctagttactgaacttataaatgatgatgcagGTGCTAAATCAGGATGAGACACCTTTGCTGTACAGTCTTGTATTTGGGGAGGGTGTTGTGAATGATGCTACATCAGTGGTGCTTTTCAATGCAATCCAAA

Basic information

species Glycine max
transcript GLYMA10G30020.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30020.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os07g47100.2 (Oryza sativa), 3'ss of exon 5
gtttgaagcaatatatttttaaaattcttccttcaactaaggtatcac-tgctagt-tactgaacttataaatgatgatgcagGTGCTAAATCAGGATGAGACACCTTTGCTGTACAGTCTTGTATTTGGGGAGGGTGTTGTGAATGATGCTACATCAGTGGTGCTTTTCAATGCAATCCAAA
||| |  | |  |  |||   | |           ||   | |   || ||||| | || ||| ||||   |     |  ||||| || ||||||||||||||||| ||  |||||||||| ||||| || || ||||||||||| |||||||||||| | ||||||||||| ||| | || |
gttagttgaacaaattttgccatacctcgagagagacctggattcaacgtgctaatgtaatgatctta---accccaaaacagGTCCTCAATCAGGATGAGACACCCTTTTTGTACAGTCTGGTATTCGGTGAAGGTGTTGTGAACGATGCTACATCAATTGTGCTTTTCAACGCACTACAGA

upper sequence: GLYMA10G30020.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G063492_T01 (Zea mays), 3'ss of exon 6
gtttgaagcaatatatttttaaaattcttccttcaactaaggtatcactgctagtta-ctgaacttataaatgatga--tgcagGTGCTAAATCAGGATGAGACACCTTTGCTGTACAGTCTTGTATTTGGGGAGGGTGTTGTGAATGATGCTACATCAGTGGTGCTTTTCAATGCAATCCAAA
|||||  |    | | |||    ||| ||   | |   ||  |   |  |  ||  |  | || |   || | || |  |||||||||| || |||||||| |||||  | || || ||||| || ||||| || |||||||| |||||||| ||||| || ||||| |||||||||||  |||
gtttgttgttgaacaattt-gccatttttatcttataaaaattgagataggaagccaatttaattggaaattcattacttgcagGTGCTTAACCAGGATGAAACACCCCTACTCTATAGTCTAGTTTTTGGTGAAGGTGTTGTTAATGATGCCACATCTGTTGTGCTCTTCAATGCAATTGAAA

upper sequence: GLYMA10G30020.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G701776_T01 (Zea mays), 3'ss of exon 2
gtttgaagcaatatatttttaaaattcttccttcaactaaggtatcactgctagttactgaacttataaatg-atga--tgcagGTGCTAAATCAGGATGAGACACCTTTGCTGTACAGTCTTGTATTTGGGGAGGGTGTTGTGAATGATGCTACATCAGTGGTGCTTTTCAATGCAATCCAAA-
|||||  |    | | | |   | ||  || |  ||  ||  |   |  |  ||  | |  | ||  ||||  || |  |||||||| |||  |||||||| |||||  | || || ||||| || ||||| || |||||||| |||||||| ||||| || ||||| |||||||||||  ||| 
gtttgttgttgaacaatctgccattttatcttataa--aaattgagataggaagccaatttaattggaaattcattacttgcagGTGTTAA-CCAGGATGAAACACCCCTACTCTATAGTCTAGTTTTTGGTGAAGGTGTTGTTAATGATGCCACATCTGTTGTGCTCTTCAATGCAATTGAAAA

upper sequence: GLYMA10G30020.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv14s0030g00710.t01 (Vitis vinifera), 3'ss of exon 5
gtttgaagcaatatatttttaaaattcttccttcaactaaggtatcactgctagtta--ctgaacttataaat---gatgatgcagGTGCTAAATCAGGATGAGACACCTTTGCTGTACAGTCTTGTATTTGGGGAGGGTGTTGTGAATGATGCTACATCAGTGGTGCTTTTCAATGCAATCCAAA
|| ||  ||| || |   ||| |      |   |||| | |||| || |  | || |  || ||| | |   |   ||||||||||||||| || ||||||||||| ||||| || || || || || ||||||||||| ||||| ||||||||  ||||||| || ||||||||||||||||| |
gtatggtgcattacaaagttatagcagc-cagacaacaatggtaccaatagttgtgaaactaaaccttttccttctgatgatgcagGTGCTTAACCAGGATGAGACGCCTTTACTTTATAGCCTGGTCTTTGGGGAGGGGGTTGTAAATGATGCAGCATCAGTTGTTCTTTTCAATGCAATCCAGA

upper sequence: GLYMA10G30020.1 (Glycine max), 3'ss of exon 6
lower sequence: PP1S113_117V6.1 (Physcomitrella patens), 3'ss of exon 4
------------------gtttgaagcaatatatttttaaaattcttccttcaactaaggtatcactgctagttactgaacttataaa---tgatgatgcagGTGCTAAATCAGGATGAGACACCTTTGCTGTACAGTCTTGTATTTGGGGAGGGTGTTGTGAATGATGCTACATCAGTGGTGCTTTTCAATGCAATCCAAA
                  |  ||   ||    | |  |   || |||| ||  | | |  | |   ||  | ||  | |  || |      ||    |||||||||| |||||||||||||| ||| |||| |||||| | || ||||| || || || || ||||||||||| || ||||| || ||    ||  | ||| 
attcatggtacctgaattggatggttcagggaaatgattggatacttcttt--aatgatttttttttgtcaattgttcactttgtggtgcttgtctttgcagGTGCTCAATCAGGATGAGACCCCTCTGCTTTACAGTTTGGTGTTTGGAGAAGGAGTAGTCAATGATGCTACTTCTGTGGTTCTATTTCGGGCTGTTCAAT

upper sequence: GLYMA10G30020.1 (Glycine max), 3'ss of exon 6
lower sequence: PP1S207_23V6.2 (Physcomitrella patens), 3'ss of exon 6
-----------------------------------------------------------------------------------------------------------------gtttgaagcaa-tatatttttaaaattcttccttcaactaaggtatcactgctagttactgaacttataaatgatgatgcagGTGCTAAATCAGGATGAGACACCTTTGCTGTACAGTCTTGTATTTGGGGAGGGTGTTGTGAATGATGCTACATCAGTGGTGCTTTTCAATGCAATCCAAA
                                                                                                                  | |  || |  |  ||| ||    |  |      || |  | | ||       ||   |||     |   |  | |||||||| || |||||||||||  ||||| | || ||||||||||| ||||| || || ||||| ||||||||||| || || ||  | |||   ||  | || |
gtgggctgcttttttcgtcactgtcattgaagcactgctgtcaagctcatgtagaaagtgtagagaagatttcaagctttcgtagattggcagagtgtctttgctccatgattttatagagaagctgcattcttctgttcttgaaagtaattgggttttcctctggcgtggttgacgacttgttttttaatgcagGTTCTTAATCAGGATGATTCACCTCTACTATACAGTCTTGTGTTTGGAGAAGGAGTTGTCAATGATGCTACCTCTGTAGTCTTATTCCGGGCTGTACAGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254323350|gb|GR835851.1|GR835851
EST:     CAATTGGTGCAATATTTGCTGCAACGGATTCTGTTTGCACATTGCAG                         GTGCTAAATCAGGATGAGACACCTTTGCTGTACAGTCTTGTATTTGGGGAG
genomic: CAATTGGTGCAATATTTGCTGCAACGGATTCTGTTTGCACATTGCAGgtttgaagca ... gatgatgcagGTGCTAAATCAGGATGAGACACCTTTGCTGTACAGTCTTGTATTTGGGGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttccttcaactaaggtatcactgctagttactgaacttataaatgatgatgcagGTGCTAAATCAGGATGAGACACCTTTGCTGTACAGTCTTGTATTTGGGGAGGGTGTTGTGAATGATGCTACATCAGTGGTGCTTTTCAATGCAATCCAAA
                                  aacttataaatgat  TA-rich tract